PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g103920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 17292.3 Da PI: 8.7443 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49 | 1.5e-15 | 103 | 153 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr+++ +g+W+AeI+dps+ ++r +lg f tae+Aa+ + a+ ++ g Csa11g103920.1 103 KKYKGVRRKP-SGKWAAEIWDPST---KARKWLGAFPTAEMAARVYNDAAAEIVG 153 59*****888.7*********965...5*******************99998866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.84E-24 | 103 | 157 | No hit | No description |
Pfam | PF00847 | 1.4E-8 | 104 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 104 | 161 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-15 | 104 | 155 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-21 | 104 | 161 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-20 | 104 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 105 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MNSSKTDCSE NVLSNDQNEN VTAVASPPPP SSSYLTRDQE HEIMVSALRQ VISNSGGHTS 60 SSNLIAAEAA LPPPDAGPCP LCGVTGCYGC TFQRNHGEIR KEKKYKGVRR KPSGKWAAEI 120 WDPSTKARKW LGAFPTAEMA ARVYNDAAAE IVGRTSARRG T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00594 | DAP | Transfer from AT5G67000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g103920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010444706.1 | 1e-118 | PREDICTED: ethylene-responsive transcription factor ERF122-like | ||||
Swissprot | Q38Q40 | 2e-77 | EF122_ARATH; Ethylene-responsive transcription factor ERF122 | ||||
TrEMBL | R0F066 | 7e-86 | R0F066_9BRAS; Uncharacterized protein | ||||
STRING | XP_010444706.1 | 1e-117 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3472 | 15 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67000.1 | 9e-76 | ERF family protein |