PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g103870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 1069aa    MW: 115762 Da    PI: 9.7809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g103870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-07142182954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Csa11g103870.1 142 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 182
                     699*****************87.....8****************98 PP
2HLH23.41.1e-07370410954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Csa11g103870.1 370 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 410
                     699*****************87.....8****************98 PP
3HLH23.41.1e-07598638954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Csa11g103870.1 598 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 638
                     699*****************87.....8****************98 PP
4HLH23.41.1e-079621002954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH    9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54  
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Csa11g103870.1  962 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 1002
                      699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-13134192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-13137192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-14139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-5143182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.71E-5156187No hitNo description
PROSITE profilePS5088815.434361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-13362420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-13365420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-14367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-5371410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.71E-5384415No hitNo description
PROSITE profilePS5088815.434589638IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-13590648IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-13593648IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-14595644IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-5599638IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.71E-5612643No hitNo description
PfamPF054983.2E-11768815IPR008801Rapid ALkalinization Factor
PROSITE profilePS5088815.4349531002IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-139541012IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-139571012IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-149591008IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-59631002IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.71E-59761007No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1069 aa     Download sequence    Send to blast
MDSDIMNMMM HQMEKLPHEF CNPNNSSFFS PDHNNNNTYP FLFNSSHHHS DHSLTNEPGF  60
RYGSAGLLTN PSSLSPNTAY SSVLLDKRNN SNNNNNSANM AAMREMIFRI AVMQPIHIDP  120
EAVKPPKRRN VRISKDPQSV AARHRRERIS ERIRILQRLV PGGTKMDTAS MLDEAIHYVK  180
FLKKQVQSLE EQAVVGGGGG GGGGPGRVLI GAGGMTAASG GGGGGGVVMK GCGAMGTHQM  240
MEKLPHEFCN PNNSSFFSPD HNNNNTYPFL FNSSHHHSDH SLTNEPGFRY GSAGLLTNPS  300
SLSPNTAYSS VLLDKRNNSN NNNNSANMAA MREMIFRIAV MQPIHIDPEA VKPPKRRNVR  360
ISKDPQSVAA RHRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KKQVQSLEEQ  420
AVVGGGGGGG GGPGRVLIGA GGMTAASGGG GGGGVVMKGC GAMGTHQMME KLPHEFCNPN  480
NSSFFSPDHN NNNTYPFLFN SSHHHSDHSL TNEPGFRYGS AGLLTNPSSL SPNTAYSSVL  540
LDKRNNSNNN NNSANMAAMR EMIFRIAVMQ PIHIDPEAVK PPKRRNVRIS KDPQSVAARH  600
RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK QVQSLEEQAV VGGGGGGGGG  660
PGRVLIGAGG MTAASGGGGG GGVVMKGCGA MGTHQMITMA AQSFSLILIV SLLTFVSLPR  720
SESLSDNPSL VLLPDGFDWP IPHADEFDII NGEESFEVTE EEDDDDGVDR RSLYWRGKKY  780
YISYGALSAN RVPCPPRSGR SYYTHNCYRA RASPYPLSLS MDSDIMNMMM HQMEKLPHEF  840
CNPNNSSFFS PDHNNNNTYP FLFNSSHHHS DHSLTNEPGF RYGSAGLLTN PSSLSPNTAY  900
SSVLLDKRNN SNNNNNSANM AAMREMIFRI AVMQPIHIDP EAVKPPKRRN VRISKDPQSV  960
AARHRRERIS ERIRILQRLV PGGTKMDTAS MLDEAIHYVK FLKKQVQSLE EQAVVGGGGG  1020
GGGGPGRVLI GAGGMTAASG GGGGGGVVMK GCGAMGTHQM VGNAQILR*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g103870.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444697.11e-111PREDICTED: transcription factor HEC1-like
RefseqXP_010444698.11e-111PREDICTED: transcription factor HEC1-like
RefseqXP_010444701.11e-111PREDICTED: transcription factor HEC1-like
RefseqXP_010444702.11e-111PREDICTED: transcription factor HEC1-like
SwissprotQ9FHA71e-104HEC1_ARATH; Transcription factor HEC1
TrEMBLR0GQL01e-104R0GQL0_9BRAS; Uncharacterized protein
STRINGXP_010444697.11e-111(Camelina sativa)
STRINGXP_010444698.11e-111(Camelina sativa)
STRINGXP_010444701.11e-111(Camelina sativa)
STRINGXP_010444702.11e-111(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.18e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  3. Sparks EE,Benfey PN
    HEC of a job regulating stem cells.
    Dev. Cell, 2014. 28(4): p. 349-50
    [PMID:24576420]
  4. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]
  5. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  6. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]
  7. Gaillochet C, et al.
    Control of plant cell fate transitions by transcriptional and hormonal signals.
    Elife, 2018.
    [PMID:29058667]