PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g103760.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 293aa    MW: 33146.7 Da    PI: 7.1964
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g103760.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17103152155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Csa11g103760.2 103 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 152
                     78*******************......55************************997 PP
2AP2431.2e-13195245155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV+ +k  grW++++  +     + k+++lg f+t+ eAa+a+++a+ k +g
  Csa11g103760.2 195 SKFRGVTLHK-CGRWESRLGQF----LNkKYVYLGLFDTEIEAARAYDKAAIKCNG 245
                     79********.7****995553....234**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-9103152IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-16103161IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-17104160IPR001471AP2/ERF domain
PROSITE profilePS5103217.899104160IPR001471AP2/ERF domain
SMARTSM003802.7E-31104166IPR001471AP2/ERF domain
CDDcd000181.13E-11104161No hitNo description
CDDcd000183.97E-24195253No hitNo description
SuperFamilySSF541711.18E-16195254IPR016177DNA-binding domain
PfamPF008479.9E-9195245IPR001471AP2/ERF domain
PROSITE profilePS5103215.066196253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-16196253IPR001471AP2/ERF domain
SMARTSM003803.1E-30196259IPR001471AP2/ERF domain
PRINTSPR003671.2E-5197208IPR001471AP2/ERF domain
PRINTSPR003671.2E-5235255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MWNLNDSPDH HEASDSRGNR VGHVSNYMSQ STTWVSSVPP VTRNFFPSQV MEPGVREIYG  60
SDFNRSQSGG KSDPSGSGRP DELAPEISPP LKKSRRGPRS RSSQYRGVTF YRRTGRWESH  120
IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFD IEDYVDDLKQ MGNLTKEEFM  180
HVLRRQSTGF PRGSSKFRGV TLHKCGRWES RLGQFLNKKY VYLGLFDTEI EAARAYDKAA  240
IKCNGKDAVT NFDPKVYEQE ELISPELKWN DYNLDLSLGE SNSEELGFKS DD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g103760.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1761450.0AK176145.1 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17.
GenBankAY0882380.0AY088238.1 Arabidopsis thaliana clone 4623 mRNA, complete sequence.
GenBankBT0292060.0BT029206.1 Arabidopsis thaliana At5g67180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444686.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ9FH951e-161TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLR0EWM51e-177R0EWM5_9BRAS; Uncharacterized protein
STRINGXP_010444685.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-157target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]