PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g103740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 185aa    MW: 21026.2 Da    PI: 5.9253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g103740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-182069255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykG+r +k +g+WvAeIr+p   +kr r +lg++ t+e Aa+a++ a  +l+g
  Csa11g103740.1 20 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 69
                    59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-302078IPR001471AP2/ERF domain
PROSITE profilePS5103222.8792077IPR001471AP2/ERF domain
SMARTSM003802.2E-392083IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-212178IPR016177DNA-binding domain
PRINTSPR003678.4E-92132IPR001471AP2/ERF domain
CDDcd000181.27E-262179No hitNo description
PfamPF008476.2E-122169IPR001471AP2/ERF domain
PRINTSPR003678.4E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDGGAVADVA VAGTRKRERP YKGIRMRKWG KWVAEIREPN KRSRLWLGSY STPEAAARAY  60
DTAVFYLRGP SARLNFPELL PREKFSDEDM SAATIRKKAT EVGAQVDALG TAVQNNRHRV  120
FGQNIDSDDD KKNFHRNYQN GEEEEDDQEE DDKGLKSGGR FLDRVDLNKL PDPESSDEEW  180
KSRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-152177663ATERF1
3gcc_A9e-152177663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g103740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207420.0AB020742.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21H1.
GenBankBT0257440.0BT025744.1 Arabidopsis thaliana At5g67190 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4471140.0DQ447114.1 Arabidopsis thaliana clone pENTR221-At5g67190 AP2 domain-containing transcription factor (At5g67190) mRNA, complete cds.
GenBankDQ6533940.0DQ653394.1 Arabidopsis thaliana clone 0000016550_0000011550 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444682.11e-133PREDICTED: ethylene-responsive transcription factor ERF010
SwissprotQ9FH941e-113ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLD7MKS31e-112D7MKS3_ARALL; Uncharacterized protein
TrEMBLR0EV511e-112R0EV51_9BRAS; Uncharacterized protein
STRINGXP_010444682.11e-133(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-107DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]