PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g103430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 257aa    MW: 27859.2 Da    PI: 7.6627
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g103430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.33.8e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+p+++r+++++sl+yeA+ r+ +Pv+Ga+g++++ +++++q+
  Csa11g103430.1   2 SCNGCRVLRKGCSENCILRPCIqwietADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTENWNICQA 96 
                     6*********************9998666789*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  Csa11g103430.1  97 AVETVLR 103
                     *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.5151107IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS FISAVPDSQR  60
PALFQSLLYE ACGRTVNPVN GAIGMLWTEN WNICQAAVET VLRGGSLRPI PELLTHGGGF  120
AGFPSPTSEE ASEICTEMLN LQQNNNNDSS DRNIYHHSRF SSSRSRSTMD SSSPPTKRKR  180
VTTSEQQQQQ PSSELDLSLF PKSTTPSSTR RRSLTPSMNS EDSVTTTTTA SFCDKGDVLY  240
GGNGGGETSK LLNLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g103430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738720.0AB473872.1 Arabidopsis thaliana ASL39 mRNA for ASYMMETRIC LEAVES2-like 39 protein, complete cds.
GenBankAF4478940.0AF447894.1 Arabidopsis thaliana LOB DOMAIN 37 (LBD37) mRNA, complete cds.
GenBankBT0244770.0BT024477.1 Arabidopsis thaliana At5g67420 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444649.10.0PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN111e-146LBD37_ARATH; LOB domain-containing protein 37
TrEMBLR0EZD11e-151R0EZD1_9BRAS; Uncharacterized protein
STRINGXP_010444649.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-123LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]