PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g103400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 255aa MW: 27363.9 Da PI: 8.1614 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.3e-05 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ CgksFs+ L H +H Csa11g103400.1 95 YKCTVCGKSFSSYQALGGHKTSH 117 9***********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.05E-10 | 94 | 117 | No hit | No description |
SMART | SM00355 | 0.0028 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.6E-14 | 95 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.7E-5 | 95 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.219 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.05E-10 | 167 | 194 | No hit | No description |
SMART | SM00355 | 0.84 | 172 | 194 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.9E-11 | 172 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.328 | 172 | 194 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 174 | 194 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MALETLNSPT ATTTTTARPL LRYREEMEPE NLEQWAKRKR TKRQRFDHHH QNQETNTKLP 60 SEEEYLALCL LMLARGSTVQ SPSPSRPSPS DQRDYKCTVC GKSFSSYQAL GGHKTSHRKP 120 TNNNSTIIIT SGNQELSNNS SHHSNSNRGP VVISVTVNTS NGAAGQTSGK IHTCSICFKS 180 FTSGQALGGH KRCHYDGGNN GGNGSSSNSV EVVAGGSDVS DVENERSSEE SAIGGGHRGF 240 DLNLPADQVS VTTS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g103400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010444644.1 | 0.0 | PREDICTED: zinc finger protein AZF1-like | ||||
Swissprot | Q9SSW1 | 1e-126 | AZF1_ARATH; Zinc finger protein AZF1 | ||||
TrEMBL | R0EU43 | 1e-134 | R0EU43_9BRAS; Uncharacterized protein | ||||
STRING | XP_010444644.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3121 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 1e-103 | zinc-finger protein 1 |
Publications ? help Back to Top | |||
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