PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g102870.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 356aa    MW: 41085.3 Da    PI: 6.5081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g102870.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12234277654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  Csa11g102870.2 234 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 277
                     589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16231296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10234277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-5235277No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16235295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
HTHISGLDCI YKYTYNFIFF DTLCFLFFLF VLIITRNQSF HHKGENKQKM ELSTQMNVYE  60
ELLVPTKQET TDNNINSLSF NGEFDHHHHH HQFFPNGYSI DYLCFNNEEE DENTLLYPSS  120
FMDLISQPPP LLLHQPPPLQ PPSPPLSSSA AVATFDYPFL EALQEIIDSS SSSPPLILQN  180
GQEDNNNNFH NPTSSYPSPL MESDQSKSFS VGYCGGETNK KKSKKLEGQP SKNLMAERRR  240
RKRLNDRLSM LRSIVPKISK MDRTSILGDA IDYMKELLDK INKLQDEEQE LGNSNNSHHS  300
KLFGDLKDLN TNEPMVRNSP KVHKRYFHIA YTALLYFLHI SPFIHELLQT NSLYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13229307583Transcription factor MYC2
5gnj_B2e-13229307583Transcription factor MYC2
5gnj_E2e-13229307583Transcription factor MYC2
5gnj_F2e-13229307583Transcription factor MYC2
5gnj_G2e-13229307583Transcription factor MYC2
5gnj_I2e-13229307583Transcription factor MYC2
5gnj_M2e-13229307583Transcription factor MYC2
5gnj_N2e-13229307583Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219241KKKSKKLEGQPSKNLMAERRRRK
2236243ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g102870.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0851340.0AY085134.1 Arabidopsis thaliana clone 13267 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087696.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL11e-145BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A178UDV41e-144A0A178UDV4_ARATH; BHLH093
STRINGXP_010484399.11e-149(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.21e-144beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]