PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g102710.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 273aa MW: 30876 Da PI: 10.1682

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g102710.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	1e-14	87	138	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ L++++P + +s+ ++ a+i e +++Y+k+L+ Csa11g102710.1 87 QRMNHIAVERNRRRQMNHFISVLKSMMPLS---YSQPNDQASIIEGTINYLKKLE 138 79**************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.69E-11	85	142	No hit	No description
PROSITE profile	PS50888	15.313	86	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-16	86	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-13	86	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-12	87	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-9	92	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
METSLSYDIL DFIQNIVVSK SQQNSLSSSS YSSTVSCSVT EQQQSHSTHK LASLRPRGGS 60 SDHDYVPSRK RTRRTTSDKK IEDVENQRMN HIAVERNRRR QMNHFISVLK SMMPLSYSQP 120 NDQASIIEGT INYLKKLEQL LHSLEAQLKA RKPNRSPNKF SNFFMFPQYS TATTASSFSS 180 SHKTVADVEV TMVERHANIK VLTKTQPRLL FKLINEFYSL GLSTLHLNLI TANEMSLFTI 240 GVKVEANCQL TPSINDVANA VHEVVRRIHK ES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	98	RMNHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g102710.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488625	1e-94	AF488625.1 Arabidopsis thaliana clone bHLH099 putative bHLH transcription factor mRNA, partial sequence.
GenBank	AY070095	1e-94	AY070095.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.
GenBank	AY096704	1e-94	AY096704.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010444538.2	0.0	PREDICTED: transcription factor bHLH99-like
Swissprot	Q9FKQ6	1e-117	BH099_ARATH; Transcription factor bHLH99
TrEMBL	R0F081	1e-128	R0F081_9BRAS; Uncharacterized protein
STRING	XP_010444538.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14959	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	1e-109	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]