PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g102460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 320aa    MW: 35003.9 Da    PI: 9.0264
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g102460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.8e-393796261
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     +++lkcprC+s ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks
  Csa11g102460.1 37 DQQTLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 96
                    57899****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-342491IPR003851Zinc finger, Dof-type
PfamPF027019.5E-333995IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4324195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSSHTNLPSP KQVPKPDNRI TGTSQTKKPP SSSVAQDQQT LKCPRCNSPN TKFCYYNNYS  60
LSQPRHFCKS CRRYWTRGGA LRNVPIGGGC RKTKKSVKPS TSSMNAVLPS SSSSSQRFFS  120
SIMDDSSKFF PPPTTMDFQL AGLSLNKIND LQLLNNQEVL DLRPMVSSGR ENTPVDVGSG  180
LSLMGFGDYN SNHSPTGFTT AGASDGNLAS SIETLSCLNQ DLHWRLQQQR MAMLFGNSKE  240
ETVVVERPQP ILYRNLEIVN SSSPSSPTKK GDNQTEWYFG NNSDNEGVIS NNANTGGGGS  300
EWNNGIQAWT DLNHYNALP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g102460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266390.0AB026639.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444508.10.0PREDICTED: dof zinc finger protein DOF5.7
SwissprotQ9LSL60.0DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBLA0A384KZI00.0A0A384KZI0_ARATH; SCAP1
TrEMBLC0SVW20.0C0SVW2_ARATH; Uncharacterized protein At5g65590 (Fragment)
STRINGXP_010444508.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.10.0Dof family protein
Publications ? help Back to Top
  1. Castorina G,Fox S,Tonelli C,Galbiati M,Conti L
    A novel role for STOMATAL CARPENTER 1 in stomata patterning.
    BMC Plant Biol., 2016. 16(1): p. 172
    [PMID:27484174]