PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g102450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 293aa    MW: 33084.1 Da    PI: 5.282
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g102450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-081444131
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                     +g+W +eEd++l+++++++G  +W++ ++  
   Csa11g102450.1 14 KGPWLPEEDDKLINYIHKHGHSSWSALPKLA 44
                     79***********************998865 PP
2Myb_DNA-binding35.62.2e-115193148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l+++++++G  +W++ ++        +++k++w+++l
   Csa11g102450.1 51 KGPWLPEEDDKLINYIHKHGHSSWSALPKLAD-----NEIKNFWNTHL 93
                     79************************888887.....********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.702942IPR017877Myb-like domain
SuperFamilySSF466891.25E-61043IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-111244IPR009057Homeodomain-like
SMARTSM00717191347IPR001005SANT/Myb domain
PfamPF002495.0E-71443IPR001005SANT/Myb domain
PROSITE profilePS5129414.64697IPR017930Myb domain
SuperFamilySSF466893.89E-1147103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-164994IPR009057Homeodomain-like
SMARTSM007171.6E-85095IPR001005SANT/Myb domain
PfamPF002494.5E-105193IPR001005SANT/Myb domain
CDDcd001671.63E-85393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRSPSSDET GLKKGPWLPE EDDKLINYIH KHGHSSWSAL PKLADETGLK KGPWLPEEDD  60
KLINYIHKHG HSSWSALPKL ADNEIKNFWN THLKKKLIQM GFDPMTHRPR TDDIFSSLSQ  120
LMSLSNLRGL VDLQQQVPIE EQALLNLQAE MARLQLFQYL LQPPPPMTSS SINPNDLNIL  180
NLLIKENSNT SNLDLGFLTS HLQDFNNNLP SLKNIDNNHF SQKSSPIWFH EPPSLNQTML  240
PSHDPCAQSV DGFGGNQASS SHDQEIAITD VVEWPDQHLF DDSMFPDIPY QS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g102450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133950.0AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankAF0628890.0AF062889.1 Arabidopsis thaliana putative transcription factor (MYB53) mRNA, partial cds.
GenBankAY5196460.0AY519646.1 Arabidopsis thaliana MYB transcription factor (At5g65230) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444505.11e-175PREDICTED: transcription factor MYB39-like
SwissprotQ9FJP21e-141MYB53_ARATH; Transcription factor MYB53
TrEMBLR0GJT71e-156R0GJT7_9BRAS; Uncharacterized protein
STRINGXP_010444505.11e-175(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-128myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]