PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g102140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 352aa    MW: 39549.7 Da    PI: 6.7998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g102140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.00054233255931
                     HHHHHHHHHHHHHHHHCTSCCC. CS
             HLH   9 ErrRRdriNsafeeLrellPkas 31 
                     Er R +riN+ + +L ell + +
  Csa11g102140.1 233 ERDRKQRINDNIKKLGELLQQKV 255
                     9******************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF469348.16E-5340IPR009060UBA-like
Gene3DG3DSA:1.10.8.104.6E-5436No hitNo description
CDDcd142792.95E-4836No hitNo description
SuperFamilySSF474596.15E-5230284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-4231284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGFRSVYQSL TELFPHIDPK ILRVVAIEHQ HDVDEAASVV ISDMCSFSSP NSTQPLNKNK  60
SKVSDDLPYL KAERDMQTED GSLSLSQWLQ PSKLPHSYLA LLNEEATPLM PLSPDFLVEK  120
VVLPDRGEAT GVGGGISTMY SFDNVGGSSL VKPSIRVQSR TNNELSGSSS KVPVVRRSSR  180
KSVQPWAPDY SEKLRSWKKR NNNNRDFPHF FGIDRDLPSK QSKRNNSQCY TSERDRKQRI  240
NDNIKKLGEL LQQKVEDDQP ELTLNAIIDH VKLLQLQMKE LSRSRLGGEP VSRPMTFIEG  300
YGHYIHHEQT MTKSLEEVME DLLTNDFDAA ANLLESKGLY LMPLSTAQGS C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g102140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444460.10.0PREDICTED: uncharacterized protein LOC104727138
TrEMBLR0GAC40.0R0GAC4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010444460.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.16e-14LJRHL1-like 2