PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g101160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 362aa    MW: 40227 Da    PI: 4.3972
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g101160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.47.4e-4661341129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtd elv +yLk+kv gkk+++ ++i+e+diyk+eP dLp k ++ +++ +wyfF++r+kky++g ++nr+t+ gyWk+tg+d++vl
  Csa11g101160.1   6 LAPGFRFHPTDVELVRYYLKRKVLGKKFQV-NAIAEIDIYKFEPPDLPeKsCLGTGDLKWYFFCPREKKYPKGGKANRSTECGYWKTTGRDRDVL 99 
                     579***************************.89**************95347777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ++e+vg  +tLv++ g++p++ +tdWv+heyrle
  Csa11g101160.1 100 Y-NNEVVGKIRTLVYHFGKTPRSDRTDWVIHEYRLE 134
                     *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-543156IPR003441NAC domain
PROSITE profilePS5100551.7536156IPR003441NAC domain
PfamPF023653.3E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVKTNLAPGF RFHPTDVELV RYYLKRKVLG KKFQVNAIAE IDIYKFEPPD LPEKSCLGTG  60
DLKWYFFCPR EKKYPKGGKA NRSTECGYWK TTGRDRDVLY NNEVVGKIRT LVYHFGKTPR  120
SDRTDWVIHE YRLEDQVLAQ KNVPQDSYVL CVLFKKNGLG PRHGSQYGAP YKDEDWSGDE  180
EEDTQHLVAI PSAVNAGPCP GPSKETSLVA TTSQSHAVKD CLTAGVISES CVSDVPPLTA  240
TVLPPLTSDV VGYAPMSSSP LLEVPHVPHD DDDELNSMLD LFSVVNDECL PFDDFDYPNG  300
VRDEPDVYVN EEEAPVVLGD GNFSGMFDLS DEQVMEMEDL IQPPTPPSPD AQASNPDESR  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-43215711169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g101160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0118220.0BT011822.1 Arabidopsis thaliana At5g49950 mRNA sequence.
GenBankBT0155830.0BT015583.1 Arabidopsis thaliana At5g64060 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444332.10.0PREDICTED: NAC domain-containing protein 82-like
RefseqXP_010444333.10.0PREDICTED: NAC domain-containing protein 82-like
SwissprotQ9FY821e-123NAC82_ARATH; NAC domain-containing protein 82
TrEMBLR0GQY90.0R0GQY9_9BRAS; Uncharacterized protein
STRINGXP_010444332.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-180NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]