PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g100860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 277aa MW: 31412.5 Da PI: 7.0185 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.7e-51 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp+GfrFhPtdeelv++yL+++++++++++ vi+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + Csa11g100860.1 7 LPAGFRFHPTDEELVKFYLCRRCASEPINV-PVIAEIDLYKFNPWELPEMALYGEKEWYFFSHRDRKYPNGSRPNRAAGTGYWKATGADKPIGK- 99 799***************************.89***************7666789*************************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvfy g+apkg kt+W+mheyrl Csa11g100860.1 100 -PKTLGIKKALVFYAGKAPKGIKTNWIMHEYRL 131 .778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-60 | 3 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.594 | 7 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-26 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MRAELNLPAG FRFHPTDEEL VKFYLCRRCA SEPINVPVIA EIDLYKFNPW ELPEMALYGE 60 KEWYFFSHRD RKYPNGSRPN RAAGTGYWKA TGADKPIGKP KTLGIKKALV FYAGKAPKGI 120 KTNWIMHEYR LANVDRSASS TTNKKNNNLR LDDWVLCRIY NKKGTMEKYL PADEKPTAMM 180 MTTSDSRCSS HVISPDVTCS DHWEVQSEPK WFEFDDAFDD KSMFGGGGGG GSIELLQNDA 240 FVPQFPYSSD FAAPFQDDSP EQKPFLNWMS FAPPQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-80 | 3 | 168 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in regulation of seed germination under flooding. {ECO:0000269|PubMed:19176720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g100860.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By low-oxygen stress. {ECO:0000269|PubMed:19176720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088431 | 0.0 | AY088431.1 Arabidopsis thaliana clone 6637 mRNA, complete sequence. | |||
GenBank | BT000896 | 0.0 | BT000896.1 Arabidopsis thaliana clone C104908 unknown protein (At5g63790) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010444295.1 | 0.0 | PREDICTED: NAC domain-containing protein 102 | ||||
Swissprot | Q8H115 | 1e-163 | NA102_ARATH; NAC domain-containing protein 102 | ||||
TrEMBL | R0GNC1 | 0.0 | R0GNC1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010444295.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 1e-161 | NAC domain containing protein 102 |
Publications ? help Back to Top | |||
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