PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g100300.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 447aa MW: 46561.8 Da PI: 6.7638

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g100300.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	9.8e-38	240	299	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+st+tkfCyynnyslsqPryfCk+CrryW kGG+lrn+PvGgg+rknkk s Csa11g100300.1 240 DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWPKGGTLRNIPVGGGCRKNKKPS 299 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	0.004	89	108	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-34	228	293	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-31	241	297	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.202	243	297	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
SSKGNYNNGC EAKSEVVLSL DWQQDQCYSN GGNGGVGKSD GGGYINGLAE SSGGSMLDSS 60 TTSPSAADIL AACSTRPQAS AVAVAAAALM DGGRRLRPPH DHPQKSSKGN YNNGCEAKSE 120 VVLSLDWQQD QCYSNGGNGG VGKSDGGGYI NGLAESSGGS MLDSSTTSPS AADILAACST 180 RPQASAEAES SGGSMLDSST TSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD 240 HPQKCPRCES THTKFCYYNN YSLSQPRYFC KTCRRYWPKG GTLRNIPVGG GCRKNKKPSS 300 SNSSSSTSSG KKPSNIVTNN TTDLMALAHS HQNYQNSPLG FLILSSRPTD FLDSKYDLMG 360 VNNDNDLVMA DHGSNGDHHH HITWGNYNNG CEAKSEVVLS LDWQQDQCYS NGGGNGGVGK 420 SDGGGYINGL GSSWNGLMNG YIWILD*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

SSKGNYNNGC EAKSEVVLSL DWQQDQCYSN GGNGGVGKSD GGGYINGLAE SSGGSMLDSS  60
TTSPSAADIL AACSTRPQAS AVAVAAAALM DGGRRLRPPH DHPQKSSKGN YNNGCEAKSE  120
VVLSLDWQQD QCYSNGGNGG VGKSDGGGYI NGLAESSGGS MLDSSTTSPS AADILAACST  180
RPQASAEAES SGGSMLDSST TSPSAADILA ACSTRPQASA VAVAAAALMD GGRRLRPPHD  240
HPQKCPRCES THTKFCYYNN YSLSQPRYFC KTCRRYWPKG GTLRNIPVGG GCRKNKKPSS  300
SNSSSSTSSG KKPSNIVTNN TTDLMALAHS HQNYQNSPLG FLILSSRPTD FLDSKYDLMG  360
VNNDNDLVMA DHGSNGDHHH HITWGNYNNG CEAKSEVVLS LDWQQDQCYS NGGGNGGVGK  420
SDGGGYINGL GSSWNGLMNG YIWILD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g100300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB009053	0.0	AB009053.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.
GenBank	AK228992	0.0	AK228992.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL16-29-O12.
GenBank	BT020467	0.0	BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBank	BT020576	0.0	BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866523.1	2e-99	dof zinc finger protein DOF5.6
Swissprot	Q9FM03	3e-88	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	D7MNC9	4e-98	D7MNC9_ARALL; Uncharacterized protein
STRING	scaffold_802976.1	6e-99	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6374	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	4e-81	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]