PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g098870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 238aa    MW: 26668.2 Da    PI: 6.1432
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g098870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.3e-151565148
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +lvd  + +G+g   +W+ +++  g++R++k+c++rw +yl
   Csa11g098870.1 15 KGPWTVEEDGKLVDFLRIHGSGggwCWRNVPKLAGLRRCGKSCRLRWTNYL 65
                     79***********************************************97 PP

2Myb_DNA-binding53.94.3e-1771115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +++eE +l +d++++lG++ W++Ia +++ gRt++++k++w+++
   Csa11g098870.1  71 RGLFSEEEIQLVIDLHARLGNR-WSKIAVELP-GRTDNDIKNYWNTH 115
                      7889******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-19667IPR009057Homeodomain-like
PROSITE profilePS5129413.7071065IPR017930Myb domain
SuperFamilySSF466893.74E-2512112IPR009057Homeodomain-like
SMARTSM007178.5E-101467IPR001005SANT/Myb domain
PfamPF002496.9E-141565IPR001005SANT/Myb domain
CDDcd001671.73E-71765No hitNo description
PROSITE profilePS5129425.74466120IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2568121IPR009057Homeodomain-like
SMARTSM007172.0E-1670118IPR001005SANT/Myb domain
PfamPF002492.1E-1571115IPR001005SANT/Myb domain
CDDcd001675.81E-1274116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGGRKPCCDE VGLRKGPWTV EEDGKLVDFL RIHGSGGGWC WRNVPKLAGL RRCGKSCRLR  60
WTNYLRPDLK RGLFSEEEIQ LVIDLHARLG NRWSKIAVEL PGRTDNDIKN YWNTHIKRKL  120
IRMGIDPNTH RRFDQQKVNE EEKVLKVNSP KPPSEPEVVV PVVLQNDTSA GNLNELADVD  180
GDDQPWSFLM KNDGVGAGEL TMLLSGDIAS SCSSSSSLWL KYGDLGYDDL ELGCFDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27131205108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g098870.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1990260.0AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds.
GenBankAY5196440.0AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444041.11e-174PREDICTED: protein ODORANT1-like
SwissprotQ9C7U72e-67MYB20_ARATH; Transcription factor MYB20
TrEMBLR0F0I21e-141R0F0I2_9BRAS; Uncharacterized protein
STRINGXP_010444041.11e-173(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.11e-126myb domain protein 99
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]