PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g094710.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 308aa MW: 32806.8 Da PI: 7.0457

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g094710.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	46	106	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ Csa11g094710.1 46 HHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 106 57899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-35	37	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.7E-33	48	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.534	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MQDIHDYSMT GGGGGGGGGR FFGGGIGGGG GGDRRMRAHQ NSILNHHQSL KCPRCNSLNT 60 KFCYYNNYNL SQPRHFCKNC RRYWTKGGVL RNVPVGGGCR KAKRSKTKQP TSSSSADKLP 120 TTTQQEHNVE DKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVV PGFDMPNLKL 180 YGNGIEWSTL LGQGSSDGGV FSEIGGFTTA SAIETTPFGF GGKFVNQDDH LKLESETVQQ 240 QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDHD 300 QNGLYLP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	24	GGRFFGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g094710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB015472	0.0	AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBank	AY056413	0.0	AY056413.1 Arabidopsis thaliana AT5g60850/mae1_100 mRNA, complete cds.
GenBank	AY081709	0.0	AY081709.1 Arabidopsis thaliana AT5g60850/mae1_100 mRNA, complete cds.
GenBank	AY085856	0.0	AY085856.1 Arabidopsis thaliana clone 19080 mRNA, complete sequence.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010443892.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
Swissprot	Q8LDR0	1e-168	DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBL	R0GRD1	1e-168	R0GRD1_9BRAS; Uncharacterized protein
STRING	XP_010443892.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-163	OBF binding protein 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu P,Chen H,Ying L,Cai W AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana. Sci Rep, 2016. 6: p. 27705 [PMID:27297966] Ramirez-Parra E, et al. The transcription factor OBP4 controls root growth and promotes callus formation. New Phytol., 2017. 213(4): p. 1787-1801 [PMID:27859363] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701]