PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g094540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 841aa MW: 91927.6 Da PI: 5.9492 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5e-18 | 23 | 81 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR ++k+ Csa11g094540.1 23 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECsilaNIEPKQIKVWFQNRRCRDKQ 81 56789***************************************************996 PP | |||||||
2 | START | 153.7 | 1.6e-48 | 159 | 364 | 2 | 202 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g+++l Csa11g094540.1 159 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPM-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELV 252 7899******************************************************.7777777777***********999999999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l+p Rdf+++Ry+ +l g++v++++S++ p+ s++vRae+l Sg+li+p+++g+s +++v+h +l++++++ +lr+l+ Csa11g094540.1 253 YMQTYAPTTLAPaRDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNaasASQFVRAEMLSSGYLIRPCDGGGSIIHIVDHLNLEAWSVPDVLRPLY 347 **************************************999999989999********************************************* PP HHHHHHHHHHHHHHTXX CS START 186 ksglaegaktwvatlqr 202 +s+ + ++k++ ++l++ Csa11g094540.1 348 ESSKVVAQKMTISALRY 364 ***********999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.305 | 18 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-16 | 19 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.0E-16 | 20 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.19E-16 | 23 | 83 | No hit | No description |
Pfam | PF00046 | 1.3E-15 | 24 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.24E-6 | 75 | 114 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.0E-4 | 79 | 128 | No hit | No description |
PROSITE profile | PS50848 | 27.323 | 149 | 377 | IPR002913 | START domain |
CDD | cd08875 | 1.60E-67 | 153 | 369 | No hit | No description |
SuperFamily | SSF55961 | 7.14E-35 | 158 | 370 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.3E-19 | 158 | 363 | IPR023393 | START-like domain |
SMART | SM00234 | 1.8E-38 | 158 | 368 | IPR002913 | START domain |
Pfam | PF01852 | 3.2E-46 | 159 | 365 | IPR002913 | START domain |
Pfam | PF08670 | 2.8E-49 | 693 | 839 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
MAVANHHERS SDSMNRHLDS SGKYVRYTAE QVEALERVYA ECPKPSSLRR QQLIRECSIL 60 ANIEPKQIKV WFQNRRCRDK QRKEASRLQS VNRKLSAMNK LLMEENDRLQ KQVSQLVCEN 120 GYMKQQLTTV VTDASCDSVV TTPQHSLRDA NSPAGLLSIA EETLAEFLSK ATGTAVDWVQ 180 MPGMKPGPDS VGIFAISQRC SGVAARACGL VSLEPMKIAE ILKDRPSWFR DCRSLEVFTM 240 FPAGNGGTIE LVYMQTYAPT TLAPARDFWT LRYTTSLDNG SFVVCERSLS GSGAGPNAAS 300 ASQFVRAEML SSGYLIRPCD GGGSIIHIVD HLNLEAWSVP DVLRPLYESS KVVAQKMTIS 360 ALRYIRQLAQ ESNGEVVYGL GRQPAVLRTF SQRLSRGFND AVNGFGDDGW STMPCDGAED 420 IIVAINSTKH LNNISNSLSF LGGVLCAKAS MLLQNVPPAV LIRFLREHRS EWADFNVDAY 480 SAATLKAGTF AYPGMRPTRF TGSQIIMPLG HTIEHEEMLE VVRLEGHSLA QEDAYMSRDV 540 HLLQICTGID ENAVGACSEL IFAPINEMFP DDAPLVPSGF RVIPVDAKTG DAQDLLTANH 600 RTLDLTSSLE VGPSPENASG NPSSSSSSSR CILTIAFQFP FENNLQDNVA GMACQYVRSV 660 ISSVQRVAMA ISPSGISPSL GSKLSPGSPE AVTLAQWISQ SYTHHLGSEL LTIDSLGSND 720 SVLKLLWDHQ DAILCCSLKP QPVFMFANQA GLDMLETTLV ALQDITLEKI FDESGRKALC 780 SDFAKLMQQG FACLPSGICV STMGRHVSYE QAVAWKVLAP SEDNNTLHCL AFSFVNWSFV 840 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g094540.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229564 | 0.0 | AK229564.1 Arabidopsis thaliana mRNA for REVOLUTA or interfascicular fiberless 1, complete cds, clone: RAFL19-08-C22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019088563.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA-like | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | R0EUU0 | 0.0 | R0EUU0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010443873.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4779 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |