PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g094540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 841aa    MW: 91927.6 Da    PI: 5.9492
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g094540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-182381357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR ++k+
  Csa11g094540.1 23 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECsilaNIEPKQIKVWFQNRRCRDKQ 81
                    56789***************************************************996 PP

2START153.71.6e-481593642202
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l 
  Csa11g094540.1 159 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPM-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELV 252
                     7899******************************************************.7777777777***********999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    s++vRae+l Sg+li+p+++g+s +++v+h +l++++++ +lr+l+
  Csa11g094540.1 253 YMQTYAPTTLAPaRDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNaasASQFVRAEMLSSGYLIRPCDGGGSIIHIVDHLNLEAWSVPDVLRPLY 347
                     **************************************999999989999********************************************* PP

                     HHHHHHHHHHHHHHTXX CS
           START 186 ksglaegaktwvatlqr 202
                     +s+ + ++k++ ++l++
  Csa11g094540.1 348 ESSKVVAQKMTISALRY 364
                     ***********999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3051882IPR001356Homeobox domain
SuperFamilySSF466891.11E-161985IPR009057Homeodomain-like
SMARTSM003892.0E-162086IPR001356Homeobox domain
CDDcd000866.19E-162383No hitNo description
PfamPF000461.3E-152481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-182578IPR009057Homeodomain-like
CDDcd146863.24E-675114No hitNo description
Gene3DG3DSA:1.20.5.1706.0E-479128No hitNo description
PROSITE profilePS5084827.323149377IPR002913START domain
CDDcd088751.60E-67153369No hitNo description
SuperFamilySSF559617.14E-35158370No hitNo description
Gene3DG3DSA:3.30.530.201.3E-19158363IPR023393START-like domain
SMARTSM002341.8E-38158368IPR002913START domain
PfamPF018523.2E-46159365IPR002913START domain
PfamPF086702.8E-49693839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAVANHHERS SDSMNRHLDS SGKYVRYTAE QVEALERVYA ECPKPSSLRR QQLIRECSIL  60
ANIEPKQIKV WFQNRRCRDK QRKEASRLQS VNRKLSAMNK LLMEENDRLQ KQVSQLVCEN  120
GYMKQQLTTV VTDASCDSVV TTPQHSLRDA NSPAGLLSIA EETLAEFLSK ATGTAVDWVQ  180
MPGMKPGPDS VGIFAISQRC SGVAARACGL VSLEPMKIAE ILKDRPSWFR DCRSLEVFTM  240
FPAGNGGTIE LVYMQTYAPT TLAPARDFWT LRYTTSLDNG SFVVCERSLS GSGAGPNAAS  300
ASQFVRAEML SSGYLIRPCD GGGSIIHIVD HLNLEAWSVP DVLRPLYESS KVVAQKMTIS  360
ALRYIRQLAQ ESNGEVVYGL GRQPAVLRTF SQRLSRGFND AVNGFGDDGW STMPCDGAED  420
IIVAINSTKH LNNISNSLSF LGGVLCAKAS MLLQNVPPAV LIRFLREHRS EWADFNVDAY  480
SAATLKAGTF AYPGMRPTRF TGSQIIMPLG HTIEHEEMLE VVRLEGHSLA QEDAYMSRDV  540
HLLQICTGID ENAVGACSEL IFAPINEMFP DDAPLVPSGF RVIPVDAKTG DAQDLLTANH  600
RTLDLTSSLE VGPSPENASG NPSSSSSSSR CILTIAFQFP FENNLQDNVA GMACQYVRSV  660
ISSVQRVAMA ISPSGISPSL GSKLSPGSPE AVTLAQWISQ SYTHHLGSEL LTIDSLGSND  720
SVLKLLWDHQ DAILCCSLKP QPVFMFANQA GLDMLETTLV ALQDITLEKI FDESGRKALC  780
SDFAKLMQQG FACLPSGICV STMGRHVSYE QAVAWKVLAP SEDNNTLHCL AFSFVNWSFV  840
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g094540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2295640.0AK229564.1 Arabidopsis thaliana mRNA for REVOLUTA or interfascicular fiberless 1, complete cds, clone: RAFL19-08-C22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019088563.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLR0EUU00.0R0EUU0_9BRAS; Uncharacterized protein
STRINGXP_010443873.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]