PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g094280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 727aa MW: 80299.2 Da PI: 6.111 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31 | 4.5e-10 | 171 | 234 | 1 | 59 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgry 59 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr +g+ Csa11g094280.1 171 FCKTLTASDTSTHGGFSVPRRAAEDCfspldyK-QQRPSQELIAKDLHGVEWKFRHIYRDEDGEL 234 99****************************963.3445679*****************9888774 PP | |||||||
2 | Auxin_resp | 119.8 | 2.1e-39 | 265 | 346 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pra+++eFv+++ek+ +++++++++G+Rf+m+fe+++s+err++G+v+gv dldp+rWpnSkWr+ Csa11g094280.1 265 VANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRNPICIGTRFRMRFEMDESPERRCAGVVTGVCDLDPYRWPNSKWRCF 346 689*****************************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-21 | 162 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.23E-27 | 165 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.57E-10 | 169 | 237 | No hit | No description |
Pfam | PF02362 | 3.7E-8 | 171 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.4E-33 | 265 | 346 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence Send to blast |
MEFDLNTEIA EVEEEENDDV VGARIIDKGT LGISPSSSSS CSSGSSSSST GSASSIYSEL 60 WHACAGPLTC LPKKGNVVVY FPQGHLEQDA LVSYSSPLEI PKFDLNPQIF CRVVNVQLLA 120 NKVTDEVYTQ VTLLPLQEFS MLNAEGKEVR ELGGEEERNG SSSVKRTPHM FCKTLTASDT 180 STHGGFSVPR RAAEDCFSPL DYKQQRPSQE LIAKDLHGVE WKFRHIYRDE DGELRLGIRR 240 AARPRNGLPD SIIEKNSCSN ILSFVANAVS TKSMFHVFYS PRATHAEFVI PYEKYITSIR 300 NPICIGTRFR MRFEMDESPE RRCAGVVTGV CDLDPYRWPN SKWRCFLVRW DESFVSDHQE 360 RVSPWEIDPS VSLPHLSIQS SPRPKRPWAG LLDTTPPGNP LTAERGGFLD FEESVRPSKV 420 LQGQENIGSA SPSQGFDVMN RRILDFAMQS HANPVLLSSR VKDRFGEFVD ATSLDPACSG 480 VMDLDRFPRV LQGQEICSLK SFPQFAGFSP AATSGKPSLG YTDPFAYQAN KSSFYPLALH 540 GIRSTHVPYQ NPYTAGNQSP GHPSRAINFG EVTRKSDAVN ESGLPSNVTA DLPFKIDMMG 600 KQKGGDFSMN VSSGCKLFGF SLPVETPASN PQGSSKRICT KVHKQGSQVG RAIDLSRLNG 660 YDDLLTELER LDFCNVVWKI HLYTKDEVEN ANDDNKSCLE QAALMMEASK SSSVSQPDSS 720 PTITRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 3e-86 | 44 | 369 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 3e-86 | 44 | 369 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 3e-86 | 44 | 369 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g094280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF013466 | 0.0 | AF013466.1 Arabidopsis thaliana auxin response factor 4 (ARF4) mRNA, complete cds. | |||
GenBank | AF344313 | 0.0 | AF344313.1 Arabidopsis thaliana auxin response factor 4 (At5g60450) mRNA, complete cds. | |||
GenBank | AY080832 | 0.0 | AY080832.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. | |||
GenBank | AY113977 | 0.0 | AY113977.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010443845.1 | 0.0 | PREDICTED: auxin response factor 4-like | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | D7MTU6 | 0.0 | D7MTU6_ARALL; Auxin response factor | ||||
STRING | XP_010443845.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |