PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g091690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 315aa    MW: 33545.7 Da    PI: 7.1325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g091690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11126171555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  Csa11g091690.1 126 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 171
                     99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.85E-12119175No hitNo description
SuperFamilySSF474598.37E-17119180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.028121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16123180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-9126171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-13127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
KRIKMGREQR KKTEEEMENG NGEGKGEFIN QNNDFFLDSM SMLSSLPPCW DPSLPPPPPP  60
PNSLFHALSV DTPFPDQFHH PQESGGPTIG SQDGLQAQGT VSTTSAPVVR QKPRVRARRG  120
QATDPHSIAE RLRRERIAER MKSLQELVPN TNKTDKASML DEIIEYVRFL QLQVKVLSMS  180
RLGGAGAVGP RLNGLSAEAG GRLNALTAPC NGVNGNGNAT GSSNESLRST EQRVAKLMEE  240
DMGSAMQYLQ GKGLCLMPIS LATAISSSST HSRGSLFHPI ISNTVAAEDA NVAAAVAAPE  300
ASSTMDDVSA ASKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g091690.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886140.0AF488614.1 Arabidopsis thaliana clone bHLH082 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443514.10.0PREDICTED: transcription factor bHLH82-like
SwissprotQ9LSQ30.0BH082_ARATH; Transcription factor bHLH82
TrEMBLD7MNY80.0D7MNY8_ARALL; Basic helix-loop-helix family protein
STRINGXP_010443514.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-132LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]