PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa11g091240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 375aa MW: 40956.7 Da PI: 6.0466 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.6 | 1.1e-07 | 19 | 57 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 +r C+ +++ + fC+ + +lC +C + +H+ H++ Csa11g091240.1 19 ARSCDACKSVTAAVFCRVDTAFLCITCDTRIHSFtrHER 57 578******99*********************6577876 PP | |||||||
2 | zf-B_box | 28.8 | 2.5e-09 | 58 | 103 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C + +H+ H++vp+ Csa11g091240.1 58 VWVCEVCEQAPASVTCKADAAALCVTCDSDIHSAnplasrHERVPV 103 689*****************************66999999999986 PP | |||||||
3 | CCT | 69.9 | 6.5e-24 | 305 | 348 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ Csa11g091240.1 305 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 348 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.6E-6 | 17 | 60 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.94 | 17 | 60 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.2E-6 | 20 | 58 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.52E-8 | 20 | 60 | No hit | No description |
PROSITE profile | PS50119 | 10.85 | 56 | 103 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-7 | 57 | 103 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.00E-9 | 59 | 103 | No hit | No description |
SMART | SM00336 | 2.9E-10 | 61 | 103 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.9E-18 | 305 | 347 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.817 | 305 | 347 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence Send to blast |
MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDTAF LCITCDTRIH SFTRHERVWV 60 CEVCEQAPAS VTCKADAAAL CVTCDSDIHS ANPLASRHER VPVESFFDSA VAKVSASSTF 120 GILGSSATVD LTDSVPVMND DLGLCPWLLP NYFNEPAKIE IGTENMKGSD FMFSDFDRLI 180 DFEFPNSLSH QHQHQPSGGD SLVPVQTKTE PLPLTNNNDH CFDIDFCRSK LSSFTYPTQS 240 LSYGVVPADQ SSLLSTSSLE YGVVPDGNTN NNSVSEISIP FNRSTITTST AATTTGGDQT 300 SSMDREARVL RYREKRKNRK FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDVFLSHV 360 YASAAAQYGV VPTF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa11g091240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY088432 | 0.0 | AY088432.1 Arabidopsis thaliana clone 6639 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010443467.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 5-like | ||||
Swissprot | Q9FHH8 | 0.0 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | R0EWL4 | 0.0 | R0EWL4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010443467.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7899 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57660.1 | 0.0 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|