PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g091210.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 773aa MW: 86233.9 Da PI: 7.402

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g091210.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.2	5.2e-17	538	587	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E++RR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Csa11g091210.1 538 RSKHSVTEQQRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 587 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.200.20	1.3E-28	7	77	No hit	No description
SuperFamily	SSF56112	1.48E-88	9	265	IPR011009	Protein kinase-like domain
CDD	cd14003	2.30E-128	11	263	No hit	No description
SMART	SM00220	1.7E-99	12	264	IPR000719	Protein kinase domain
Pfam	PF00069	8.6E-67	12	264	IPR000719	Protein kinase domain
PROSITE profile	PS50011	50.195	12	264	IPR000719	Protein kinase domain
PROSITE pattern	PS00107	0	18	41	IPR017441	Protein kinase, ATP binding site
Gene3D	G3DSA:1.10.510.10	2.5E-62	78	274	No hit	No description
PROSITE pattern	PS00108	0	130	142	IPR008271	Serine/threonine-protein kinase, active site
PROSITE profile	PS50816	11.835	285	309	IPR018451	NAF/FISL domain
Pfam	PF03822	1.5E-16	288	345	IPR004041	NAF domain
CDD	cd12195	9.57E-37	291	405	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.7E-23	536	607	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.99	536	586	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-18	537	606	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.94E-14	538	589	No hit	No description
Pfam	PF00010	2.6E-14	538	587	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-12	542	592	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0007165	Biological Process	signal transduction
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MGLFGTKKIG KYEIGRTIGE GNFAKVKLGY DTTNGTYVAV KIIDKALVIQ KGLESQVKRE 60 IRTMKLLNHP NIVQIHEVIG TKTKICIVME HVAGGQLSDR LDRRKMKESD ARKLFQQLID 120 AVDYCHNRGV YHRDLKPQNL LLDSKGNLKV SDFGLSAVPK SGDMLSTACG SPCYIAPELI 180 MNKGYSGAAV DVWSCGVILF ELLAGYPPFD DHTLPVLYKK ILRADYTFPP GFTGEQKRLI 240 FNILDPNPLR RITLAEIIIQ DSWFKIGYAP AYHQENVAEI NAATTSSNFI NAFQIIAMSS 300 DLDLSGLFEE NDDKRYKTRI GSKNTAQETI KKIEAAATDV SLSVERIKHF KVKIQPKEIR 360 SRSSYDLLSA EVIEVTPTNC VIEISKSAGE LRLYMEFCQS LSSLLTAELL RWDESVSGKK 420 GQTRKENNVG ERANMRADVA ATVGQWPVVE RRSQSLTNNH MSGFTSRSSS QGSGLKSQSF 480 MDMIRSAKGS SQEDDLDDEE DFLMMKESSS TSQSHRVDLR VKADVRGSGN DQKLSTPRSK 540 HSVTEQQRRS KINDRFQMLR QLIPNSDQKR DKASFLLEVI EYIQFLQEKA DKYETSYQGW 600 NHEPAKLLNW QRNNQQLVPE GTVAFAPKLE EEKNNIPVPV LATAQGVAID HPTAATTFPL 660 SIQSNNFFSP VIAGNPVPQF HTRVASSEAV EPIPSSRSQT QPLKEEEEVE DEEILEGNIS 720 ISSVYSQGLV KTLREALENS GVDLTKASIS SIHWIKIAPV ETVRPMNQMC GS*

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MGLFGTKKIG KYEIGRTIGE GNFAKVKLGY DTTNGTYVAV KIIDKALVIQ KGLESQVKRE  60
IRTMKLLNHP NIVQIHEVIG TKTKICIVME HVAGGQLSDR LDRRKMKESD ARKLFQQLID  120
AVDYCHNRGV YHRDLKPQNL LLDSKGNLKV SDFGLSAVPK SGDMLSTACG SPCYIAPELI  180
MNKGYSGAAV DVWSCGVILF ELLAGYPPFD DHTLPVLYKK ILRADYTFPP GFTGEQKRLI  240
FNILDPNPLR RITLAEIIIQ DSWFKIGYAP AYHQENVAEI NAATTSSNFI NAFQIIAMSS  300
DLDLSGLFEE NDDKRYKTRI GSKNTAQETI KKIEAAATDV SLSVERIKHF KVKIQPKEIR  360
SRSSYDLLSA EVIEVTPTNC VIEISKSAGE LRLYMEFCQS LSSLLTAELL RWDESVSGKK  420
GQTRKENNVG ERANMRADVA ATVGQWPVVE RRSQSLTNNH MSGFTSRSSS QGSGLKSQSF  480
MDMIRSAKGS SQEDDLDDEE DFLMMKESSS TSQSHRVDLR VKADVRGSGN DQKLSTPRSK  540
HSVTEQQRRS KINDRFQMLR QLIPNSDQKR DKASFLLEVI EYIQFLQEKA DKYETSYQGW  600
NHEPAKLLNW QRNNQQLVPE GTVAFAPKLE EEKNNIPVPV LATAQGVAID HPTAATTFPL  660
SIQSNNFFSP VIAGNPVPQF HTRVASSEAV EPIPSSRSQT QPLKEEEEVE DEEILEGNIS  720
ISSVYSQGLV KTLREALENS GVDLTKASIS SIHWIKIAPV ETVRPMNQMC GS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4czt_A	1e-126	5	405	6	429	CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 23
4czt_B	1e-126	5	405	6	429	CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 23
4czt_C	1e-126	5	405	6	429	CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 23
4czt_D	1e-126	5	405	6	429	CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 23
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Functional Description ? help Back to Top
Source	Description
UniProt	CIPK serine-threonine protein kinases interact with CBL proteins. Binding of a CBL protein to the regulatory NAF domain of CIPK protein lead to the activation of the kinase in a calcium-dependent manner (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g091210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352684	0.0	AK352684.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-O03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010443456.1	0.0	PREDICTED: CBL-interacting serine/threonine-protein kinase 21-like
Swissprot	Q94CG0	0.0	CIPKL_ARATH; CBL-interacting serine/threonine-protein kinase 21
TrEMBL	D7MNC1	0.0	D7MNC1_ARALL; Non-specific serine/threonine protein kinase
STRING	XP_010443456.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	0.0	bHLH family protein

Publications ? help Back to Top
Luan S,Kudla J,Rodriguez-Concepcion M,Yalovsky S,Gruissem W Calmodulins and calcineurin B-like proteins: calcium sensors for specific signal response coupling in plants. Plant Cell, 2002. 14 Suppl: p. S389-400 [PMID:12045290] Hrabak EM, et al. The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol., 2003. 132(2): p. 666-80 [PMID:12805596] Kolukisaoglu U,Weinl S,Blazevic D,Batistic O,Kudla J Calcium sensors and their interacting protein kinases: genomics of the Arabidopsis and rice CBL-CIPK signaling networks. Plant Physiol., 2004. 134(1): p. 43-58 [PMID:14730064] Rossignol P,Collier S,Bush M,Shaw P,Doonan JH Arabidopsis POT1A interacts with TERT-V(I8), an N-terminal splicing variant of telomerase. J. Cell. Sci., 2007. 120(Pt 20): p. 3678-87 [PMID:17911168] Pandey GK, et al. Calcineurin B-Like Protein-Interacting Protein Kinase CIPK21 Regulates Osmotic and Salt Stress Responses in Arabidopsis. Plant Physiol., 2015. 169(1): p. 780-92 [PMID:26198257]