PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g090450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 449aa    MW: 51025.9 Da    PI: 10.1199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g090450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.4e-12276321555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L+ A e ++sLq
  Csa11g090450.1 276 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTIAREQLSSLQ 321
                     8899********************97.....8***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-15263335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.691271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-10273325No hitNo description
Gene3DG3DSA:4.10.280.102.0E-13275339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9276321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDAFYNEASQ EPPSSSSRSL ARSLLLEYRQ SLIPLHNGHV PSMAFMNNLP YVEIRQQEIQ  60
RLAYNDAQRL FYQMKIEESL REWFPEDFNR NSSPVNSDYL RPPRHLSTSS SSLSPNHVSE  120
YSSLLFPLIP KPSTTTDAVN APGHPLLAPI NMIHHQQQQQ EPLFRNRELE EEAMTQAILA  180
VLRGSSSPPS TSSSPLRKGR ATAFKRYYCM ISGGDRARPQ PSVRKQSMMK RAITFYNRLN  240
IQRRERFVRE NATMAGDGSG GSGGGGRSPS TTQLHHMISE RKRREKLNES FQALRSLLPP  300
GTKKDKASVL TIAREQLSSL QGEISKLLKR NRELEAKLAG EREIGNDLQP DERFNVCIRH  360
IPESTSRERM LDLRVVLRED IIRVDDLMIR LLEFLKQINN VSLVSIEARS RARDSSVVLV  420
SLRLKIEGEW DESAFQEAVR RVVADLAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284ERKRRE
2280285RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g090450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240350.0AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019088479.10.0PREDICTED: putative transcription factor bHLH041 isoform X2
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLR0GQ200.0R0GQ20_9BRAS; Uncharacterized protein
STRINGXP_010443354.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]