PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g090220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HRT-like
Protein Properties Length: 506aa    MW: 56938.5 Da    PI: 9.2825
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g090220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like52.67.8e-17302332131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +C v le+Gs+C+r+PvkgRKRC eHKG+R+
  Csa11g090220.1 302 VCRVVLENGSFCSRSPVKGRKRCVEHKGQRV 332
                     699***************************7 PP

2HRT-like521.2e-16363393131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGvil d  +C++ Pv+gRKRCe HKGmRi
  Csa11g090220.1 363 TCGVILPDMEPCNKRPVPGRKRCEDHKGMRI 393
                     7*****************************7 PP

3HRT-like30.27.5e-10432458228
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                     C +++++G +C+r+  kg KRC++HK 
  Csa11g090220.1 432 CEATTKNGLPCTRSSSKGSKRCWQHKE 458
                     99************************7 PP

4HRT-like51.41.8e-16475504231
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     CGv+  +G +C+r+PvkgRKRCeeHKGmRi
  Csa11g090220.1 475 CGVKQCNGLICERSPVKGRKRCEEHKGMRI 504
                     *****************************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEVLIGSNDW EDFNNGKDGV GRYRVQNLPR KSFPGLYEIG VAVISQDQGR KLEPDDVLIG  60
SNDWEDFNNG KDGVGRYRVQ NLPRKSFPGL YELGVAVISQ DQGRKLEPDD VLAAYLGQAE  120
SVRTRLQRYG RSGAHLRNVY NLVDCETVES SPVKKAVTGG LFEDIFSKGG SILYRWAPMG  180
SKRVAEATEG MLLSTFDYAW NKGSNGERRQ LDLLKKLGDR EFMSKRKSGI SRVFFPFLRN  240
QVGIRIKGEK HVLKEERKLS SDVDEEEKSS NFLTSLLKLT RSRPQPVSDR FDEVDGSSTD  300
PVCRVVLENG SFCSRSPVKG RKRCVEHKGQ RVCRVSPVKQ SPPPNPEMFT RQDHHNHNDS  360
DVTCGVILPD MEPCNKRPVP GRKRCEDHKG MRINAFLFLL NQTDREKTVK DERSDPESHK  420
ELSDEEGSPS FCEATTKNGL PCTRSSSKGS KRCWQHKEKI SPVCFQPKAA KIVACGVKQC  480
NGLICERSPV KGRKRCEEHK GMRIT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g090220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133920.0AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010443331.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
SwissprotF4K9330.0ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A178UQQ20.0A0A178UQQ2_ARATH; ET2
STRINGXP_010443331.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.10.0effector of transcription2