PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g088930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 271aa    MW: 30876.7 Da    PI: 5.4354
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g088930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.3e-16344243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    +i n+  r +t+ kR++ + KKA+E S+LC+++ ++i+++++
  Csa11g088930.1  3 KIPNEKTRITTYKKRKACLYKKASEFSTLCGVDTCLIVYGPS 44
                    7899************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.54154IPR002100Transcription factor, MADS-box
CDDcd002661.06E-24173No hitNo description
SuperFamilySSF554553.14E-17190IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-6153IPR002100Transcription factor, MADS-box
PfamPF003192.9E-16344IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEKIPNEKTR ITTYKKRKAC LYKKASEFST LCGVDTCLIV YGPSRAGDEM VAEPELWPKD  60
ESKVREIITK YRDIASSSCT KTYTVQECLE KNNTKVENSK TATKYQPWDK QLDKCSLNEL  120
YAVFVAVENK IQEATNKNQP FPDSTSWSHE QLALSGYNQQ CLEQYQLLPM PTMEHNEFSF  180
FPFNNQVSST KTEVPSFSHG AEPMIANGQT FFYGSCSDGP YGPLVQRTAY MEPIQWGLGN  240
SMFNDAKQFP DYPFRFAQNN DLEDSSKHPM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g088930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446128.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLR0GT531e-172R0GT53_9BRAS; Uncharacterized protein
STRINGXP_010446128.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-168M-type_MADS family protein