PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g085900.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 306aa MW: 35134.7 Da PI: 8.8461

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g085900.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	9.1e-19	4	59	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t+eql++Le++F n+++ + + +L++klgL++rqV vWFqN+Ra+ k Csa11g085900.1 4 RNKKKRLTQEQLRQLEKCFTVNKKLEPDLKIQLSNKLGLPQRQVAVWFQNKRARSK 59 567889************************************************99 PP
2	Homeobox	58.8	9.1e-19	156	211	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t+eql++Le++F n+++ + + +L++klgL++rqV vWFqN+Ra+ k Csa11g085900.1 156 RNKKKRLTQEQLRQLEKCFTVNKKLEPDLKIQLSNKLGLPQRQVAVWFQNKRARSK 211 567889************************************************99 PP
3	HD-ZIP_I/II	97.3	1.5e-31	5	97	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl++eq+++LE++F+ ++kLep+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE ++ aL+++++a +++++Le++ve L++elk+ Csa11g085900.1 5 NKKKRLTQEQLRQLEKCFTVNKKLEPDLKIQLSNKLGLPQRQVAVWFQNKRARSKTQSLELQHCALQSKLEAALSDKAKLEHQVEFLQDELKR 97 59***************************************************************************************9986 PP
4	HD-ZIP_I/II	97.3	1.5e-31	157	249	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl++eq+++LE++F+ ++kLep+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE ++ aL+++++a +++++Le++ve L++elk+ Csa11g085900.1 157 NKKKRLTQEQLRQLEKCFTVNKKLEPDLKIQLSNKLGLPQRQVAVWFQNKRARSKTQSLELQHCALQSKLEAALSDKAKLEHQVEFLQDELKR 249 59***************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.362	1	61	IPR001356	Homeobox domain
SMART	SM00389	7.8E-18	3	65	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.98E-17	3	62	IPR009057	Homeodomain-like
Pfam	PF00046	4.0E-16	4	59	IPR001356	Homeobox domain
CDD	cd00086	1.11E-14	4	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.6E-18	7	64	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	36	59	IPR017970	Homeobox, conserved site
SuperFamily	SSF46689	3.17E-19	141	214	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-19	143	207	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.362	153	213	IPR001356	Homeobox domain
SMART	SM00389	7.8E-18	155	217	IPR001356	Homeobox domain
CDD	cd00086	1.11E-14	156	214	No hit	No description
Pfam	PF00046	4.0E-16	156	211	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	188	211	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
SQSRNKKKRL TQEQLRQLEK CFTVNKKLEP DLKIQLSNKL GLPQRQVAVW FQNKRARSKT 60 QSLELQHCAL QSKLEAALSD KAKLEHQVEF LQDELKRSRN QLALFTNHDS PVCNSYLGSC 120 EERHAHDDEV VVFDELYACF VSNGHGSSST SWSQSRNKKK RLTQEQLRQL EKCFTVNKKL 180 EPDLKIQLSN KLGLPQRQVA VWFQNKRARS KTQSLELQHC ALQSKLEAAL SDKAKLEHQV 240 EFLQDELKRS RNQLALFTNH DSPVCNSYLG SCEERHAHDD EVVVFDELYA CFVSNGHGSS 300 STSWV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g085900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007644	1e-143	AB007644.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17.
GenBank	AK229211	1e-143	AK229211.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-49-M21.
GenBank	BT015927	1e-143	BT015927.1 Arabidopsis thaliana At5g53980 mRNA, complete cds.
GenBank	BT021920	1e-143	BT021920.1 Arabidopsis thaliana At5g53980 gene, complete cds.
GenBank	CP002688	1e-143	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010442971.1	1e-107	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
Refseq	XP_010442972.1	1e-107	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
Swissprot	Q9FN29	2e-90	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	D7MTN0	4e-92	D7MTN0_ARALL; ATHB52
STRING	XP_010442971.1	1e-106	(Camelina sativa)
STRING	XP_010442972.1	1e-106	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-91	homeobox protein 52