PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g085560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRF
Protein Properties Length: 372aa    MW: 41036 Da    PI: 7.6108
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g085560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.98.4e-24112155245
             WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      epgrCrRtDGKkWRC ++v++++k+CErHlhrgr rsrk++e+
  Csa11g085560.1 112 LEPGRCRRTDGKKWRCAKEVVSNHKYCERHLHRGRPRSRKHVEP 155
                     69***************************************996 PP
2QLQ514.3e-186394233
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33
                    +FT+aQl +L++Q+++yKy++a+ PvP +Ll+
  Csa11g085560.1 63 PFTNAQLKELERQAMIYKYMIASIPVPFDLLV 94
                    9*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-106298IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.1866398IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.7E-116393IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.438111155IPR014977WRC domain
PfamPF088794.0E-19113154IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDFLKVSDKT TVPCRSDSMF GLNQQQYKES SFGFRDMEIH PHPHHAITPY SGNGVLGWYY  60
YYPFTNAQLK ELERQAMIYK YMIASIPVPF DLLVSSSSST TPCNNKNIVG DLEPGRCRRT  120
DGKKWRCAKE VVSNHKYCER HLHRGRPRSR KHVEPPYSRP NNNGGSVKNR DLKTLPQKLS  180
SSSVKDKILE PLEVSSSLSN YIESRGSEMF PVPAETEQEN KYLNFIDVWS DGVRSSEKQS  240
TTTSTPTPVS SSNGNLSLYS LDLSMGANNL MGQDEMGLIQ MGLGVIGSSR EDHHGYGPYG  300
VSASLEEMSS WLAPMSTLPG GPLAEILRPS ANLAISGDIE SYSLTATPSS SPSRVVKKTI  360
TSSVSDESSQ I*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g085560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1761090.0AK176109.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL22-89-N21.
GenBankBT0108820.0BT010882.1 Arabidopsis thaliana At5g53660 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442940.10.0PREDICTED: growth-regulating factor 7
SwissprotQ9FJB80.0GRF7_ARATH; Growth-regulating factor 7
TrEMBLR0GAD30.0R0GAD3_9BRAS; Uncharacterized protein
STRINGXP_010442940.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.10.0growth-regulating factor 7
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]