PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g085120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 368aa    MW: 40770 Da    PI: 4.5166
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g085120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.7e-20132182155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  Csa11g085120.1 132 KKFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 182
                     59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.60E-34132189No hitNo description
SMARTSM003801.7E-39133196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-30133190IPR001471AP2/ERF domain
PROSITE profilePS5103223.775133190IPR001471AP2/ERF domain
PfamPF008474.6E-12133182IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21133191IPR016177DNA-binding domain
PRINTSPR003672.8E-10134145IPR001471AP2/ERF domain
PRINTSPR003672.8E-10156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEEFIDFRPL KYTEHKTSVT KYTKKSPPAK LSSSAVDHHH HHHQSLRKVS ICFTDPDATD  60
SSSDEDEQDF LFPRRRVKRF VNEITVEPAC NNTTTGGVSL KDKKRLSSSS ADESQSPAKR  120
PLKASVVAGQ TKKFRGVRQR PWGKWAAEIR DPEQRRRIWL GTFETAEEAA VVYDNAAIRL  180
RGPDALTNFS IPPQEEEEEP EPVLDTKPEI NITTTTTTTT TSCSESTEDF QHLSSPTSVL  240
NLGSEEIQQV QQPFKSAKPE PGISDAPWWH TGFGAGSGET DDSFPLDTPF LDNYFNESPP  300
EMSIFDQTMG GMGQVFTGND DIFGDMFLDG QSINIGGDDL MTSSSIKDIG SMFSDFDDSL  360
ISDLLVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22132191161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g085120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442886.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-170CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLV4NBA31e-173V4NBA3_EUTSA; Uncharacterized protein
STRINGXP_010442886.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-145cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]