PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g084870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 225aa    MW: 25987.7 Da    PI: 7.4361
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g084870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.32.2e-26120170252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ++++++++++++F+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl
  Csa11g084870.1 120 QDKLEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 170
                     6799*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.985106191IPR003035RWP-RK domain
PfamPF020429.9E-22123170IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDPNSISLLN SQKIENDYDP DSLYDMLDKL PPLESLLDIE DLKPTRSLHF QFQYESFEDL  60
VESIDVTNII PSDDIDMLAQ EPYISSGSSS PLAVENDCPS SNVRSEKRTV KKRNAKKKRQ  120
DKLEMSEIKQ FFDRPIMKAA KELNVGLTVL KKRCRELGIY RWPHRKLKSL NSLIKNLKSV  180
GMEEEVKNLE EHRVLIEQEP DAELSDGTKK LRQACFKANY KRRK*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g084870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0181162e-62AB018116.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNB8.
GenBankCP0026882e-62CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445487.11e-154PREDICTED: protein RKD4-like
SwissprotQ9LVU81e-113RKD4_ARATH; Protein RKD4
TrEMBLR0GE401e-126R0GE40_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010442858.11e-163(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125852230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.11e-100RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER
    Gene regulatory network models for floral organ determination.
    Methods Mol. Biol., 2014. 1110: p. 441-69
    [PMID:24395275]