PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g084240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 676aa    MW: 73270.9 Da    PI: 5.7034
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g084240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.93.2e-1062866752374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++++e+A+a+++g++e a++lLar+se+ s ++++ ++l+ +++ AL+ r+++  ++ ++ l++ +t e   +e+l +++l++e+sP++k++++
  Csa11g084240.1 286 RQTVMEIATAIAEGKTEIASELLARVSETPSLRRNSEEKLVDFMVTALRYRINN--NNPAERLASPAT-ELYGKEHLLSTQLLYELSPCFKLGFM 377
                     6889**************************************************..333444433333.3459********************** PP

            GRAS  97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpeg..........ppslRiTgvgspesg.....skeeleetgerLakfAeel 172
                     +aN aIl+++ ++      +H+iDfdi++G+Q+++Ll+aL++R++g          +p ++iT+v ++e +      +e+l+++g+ L+++ ++l
  Csa11g084240.1 378 AANLAILDSAGNNdegvMNLHVIDFDIGEGGQYVNLLHALSTRRNGinqgqkqstkTPVVKITVVTNSEGFvvgdgGEEKLKAVGDLLSQLGDRL 472
                     **********9997666677***********************97777778888889**********8777999999****************** PP

            GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                     g++++f v+++ rl dl+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++e++ +y al
  Csa11g084240.1 473 GISVSFYVVASLRLGDLSRESLGCEPDEPLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTIVEQEMNSNTAPFLGRVSESCACYGAL 567
                     ********8888*********************************************************************************** PP

            GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvl 360
                     ++s+e+++p+ + +r kvE+  +gr++ n+vaceg +r+er+e ++kWr+r+++aGF+ ++ sek+a+++k+ l++ k    g++v+e++g +++
  Csa11g084240.1 568 LESVESTVPSSNLDRGKVEEG-IGRKLINAVACEGIDRIERCEVFGKWRMRMSMAGFELMQSSEKIAESMKSRLSNGKrvHSGFTVKEDNGGVCF 661
                     *********************.***************************************************9988777899************ PP

            GRAS 361 gWkdrpLvsvSaWr 374
                     gW++r++ ++SaWr
  Csa11g084240.1 662 GWMGRTIAVASAWR 675
                     *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.159259653IPR005202Transcription factor GRAS
PfamPF035141.1E-103286675IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MSSGFPGGGG GPEFYGGGRS MIHGGPGTVI NVGSNNNNNP QPTYRNQIPG IFLDQIGNRV  60
AAGHGFAGKR TLADFQAAQQ QHHQQQQQQQ QPFYNQAALN AFLLRSVKPR NHQNHLQSPS  120
PVIDLTSLND MSFSQRYGLP VLRSQTTQQQ SDLGLFGGIR MGFGSGNDNN NYMTLTGVPC  180
IEPVQRNRVH ESENNNNMLN SLRELEKQLL DDDDDESDAQ GGGGGDDDVS VITNSNSDWI  240
QNLVTPNPNP NPNPYPVTSS SPSSSSSSSS PSTASTTTTK ASVCSRQTVM EIATAIAEGK  300
TEIASELLAR VSETPSLRRN SEEKLVDFMV TALRYRINNN NPAERLASPA TELYGKEHLL  360
STQLLYELSP CFKLGFMAAN LAILDSAGNN DEGVMNLHVI DFDIGEGGQY VNLLHALSTR  420
RNGINQGQKQ STKTPVVKIT VVTNSEGFVV GDGGEEKLKA VGDLLSQLGD RLGISVSFYV  480
VASLRLGDLS RESLGCEPDE PLAVNLAFKL YRVPDESVCT ENPRDELLRR VKGLKPRVVT  540
IVEQEMNSNT APFLGRVSES CACYGALLES VESTVPSSNL DRGKVEEGIG RKLINAVACE  600
GIDRIERCEV FGKWRMRMSM AGFELMQSSE KIAESMKSRL SNGKRVHSGF TVKEDNGGVC  660
FGWMGRTIAV ASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B6e-3325167565473Protein SHORT-ROOT
5b3h_B3e-332636754419Protein SHORT-ROOT
5b3h_E3e-332636754419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g084240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442777.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLR0EW310.0R0EW31_9BRAS; Uncharacterized protein
STRINGXP_010442777.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8