PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g084030.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 108aa    MW: 12625 Da    PI: 11.0649
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g084030.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK802.4e-251161252
          RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                    +k+++l+d+++ F+lpi+ AAk++++c+TvLK+iCR+  ++RWPhRkiksl
  Csa11g084030.2 11 TKRLTLKDINMLFHLPIETAAKQMNLCPTVLKKICRKGSLMRWPHRKIKSL 61
                    799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.529181IPR003035RWP-RK domain
PfamPF020427.8E-221461IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MYRGQEQRER TKRLTLKDIN MLFHLPIETA AKQMNLCPTV LKKICRKGSL MRWPHRKIKS  60
LHTKITSLKS LVHTAKNDEV KARTEAEIER LQRRVDKICS DALKNMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g084030.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087630.14e-65PREDICTED: uncharacterized protein LOC104728818
TrEMBLA0A1R7T3I32e-42A0A1R7T3I3_ARATH; RWP-RK domain protein
TrEMBLR0GU101e-42R0GU10_9BRAS; Uncharacterized protein
STRINGXP_010446048.15e-64(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.13e-13RWP-RK domain-containing protein