PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g083670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 325aa    MW: 34726.1 Da    PI: 6.3223
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g083670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.8e-1469118155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  Csa11g083670.1  69 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 118
                     5699**975..6*********843...5************************987 PP
2AP245.51.8e-14165214155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  Csa11g083670.1 165 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 214
                     5699**975..6*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1769126IPR016177DNA-binding domain
SMARTSM003802.4E-2570132IPR001471AP2/ERF domain
PROSITE profilePS5103219.24370126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2471126IPR001471AP2/ERF domain
PfamPF008474.3E-871118IPR001471AP2/ERF domain
CDDcd000187.78E-1571126No hitNo description
SuperFamilySSF541717.85E-17165222IPR016177DNA-binding domain
SMARTSM003802.4E-25166228IPR001471AP2/ERF domain
PROSITE profilePS5103219.243166222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-24167222IPR001471AP2/ERF domain
PfamPF008474.3E-8167214IPR001471AP2/ERF domain
CDDcd000187.78E-15167222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSNTKSPTTG NQETTTSSRE VSIALPSKPS DHSPQSSPSS SSSPRPSTLA SAGGSPARRT  60
GTGLSGKHSF FRGIRLRNGK WVSEIREPRK TTRIWLGTYP VPEMAAAAYD VAALALKGSD  120
AVLNFPGLAL TYVPPVSNSA ADIRAAASKA AEMKQPDPGE AEKHSFFRGI RLRNGKWVSE  180
IREPRKTTRI WLGTYPVPEM AAAAYDVAAL ALKGSDAVLN FPGLALTYVP PVSNSAADIR  240
AAASKAAEMK QPDPGEAEKV LDPTGQPGKE EEVVVEVEEG FEFMDEEEML NMPTLLTEMA  300
EGMLMSPPRM XEALPNRLLS NQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12153222172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g083670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154781e-125AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15.
GenBankAK1764641e-125AK176464.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-F17.
GenBankCP0026881e-125CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087625.12e-95PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ908e-74ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLD7MRL75e-73D7MRL7_ARALL; AP2 domain-containing protein
STRINGXP_010442714.13e-83(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-53ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]