PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g083660.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 238aa    MW: 25405.4 Da    PI: 4.7696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g083660.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-1469118155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  Csa11g083660.1  69 SFFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPVPEMAAAAYDVAALALKG 118
                     5699**975..6*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-1769126IPR016177DNA-binding domain
SMARTSM003802.4E-2570132IPR001471AP2/ERF domain
PROSITE profilePS5103219.24370126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2471126IPR001471AP2/ERF domain
CDDcd000187.49E-1671126No hitNo description
PRINTSPR003678.2E-67182IPR001471AP2/ERF domain
PfamPF008472.6E-871118IPR001471AP2/ERF domain
PRINTSPR003678.2E-6108128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSNTKSPTTG NQETTTSSRE VSIALPSKPS DHSPQSSPSS SSSPRPSTLA SAGGSPARRT  60
GTGLSGKHSF FRGIRLRNGK WVSEIREPRK TTRIWLGTYP VPEMAAAAYD VAALALKGSD  120
AVLNFPGLAL TYVPPVSNSA ADIRAAASKA AEMKQPDPGE AEKVLDPTGQ PGKEEEVVVE  180
GEEGFEFMDE EEMLNMPTLL TEMAEGMLMS PPRMMITPTV DDDSPENHHG DNLWSYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1361126572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g083660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154781e-171AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15.
GenBankAK1764641e-171AK176464.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-25-F17.
GenBankCP0026881e-171CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442714.11e-173PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ901e-107ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLR0GRU91e-110R0GRU9_9BRAS; Uncharacterized protein
STRINGXP_010442714.11e-173(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-82ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]