PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g083480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 173aa    MW: 19936.3 Da    PI: 10.1077
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g083480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.7e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + rqvtfskRr g++KKA+ELSvLCda+va +ifs++g+ ye++s
  Csa11g083480.1  9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKGRSYEFAS 59
                    68***********************************************86 PP
2K-box59.21.8e-20851681194
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     e+  + l++e   + k+ie L+  +R+l+G++L  +s+keLq + +q+eksl  +Rs+K +l+ +++++l  ke+el++e  +L
  Csa11g083480.1  85 EQYVQGLKKETVTMVKKIEVLEVHNRKLMGQGLAFCSVKELQDIATQIEKSLYIVRSTKAKLYEDELKKLEAKERELKDERVRL 168
                     566788999*************999******************************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.6161IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-28323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-30375IPR002100Transcription factor, MADS-box
CDDcd002651.03E-37373No hitNo description
PfamPF003191.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.08588172IPR002487Transcription factor, K-box
PfamPF014861.1E-1989171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRSYEFASS  60
DIQKTIKRYV EYKRECFGAE THPIEQYVQG LKKETVTMVK KIEVLEVHNR KLMGQGLAFC  120
SVKELQDIAT QIEKSLYIVR STKAKLYEDE LKKLEAKERE LKDERVRLCG KV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-18172172Myocyte-specific enhancer factor 2B
1tqe_Q1e-18172172Myocyte-specific enhancer factor 2B
1tqe_R1e-18172172Myocyte-specific enhancer factor 2B
1tqe_S1e-18172172Myocyte-specific enhancer factor 2B
5f28_A2e-18173173MEF2C
5f28_B2e-18173173MEF2C
5f28_C2e-18173173MEF2C
5f28_D2e-18173173MEF2C
6c9l_A1e-18172172Myocyte-specific enhancer factor 2B
6c9l_B1e-18172172Myocyte-specific enhancer factor 2B
6c9l_C1e-18172172Myocyte-specific enhancer factor 2B
6c9l_D1e-18172172Myocyte-specific enhancer factor 2B
6c9l_E1e-18172172Myocyte-specific enhancer factor 2B
6c9l_F1e-18172172Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g083480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412211e-178AY141221.1 Arabidopsis thaliana MADS-box protein AGL72 mRNA, complete cds.
GenBankDQ4470611e-178DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds.
GenBankDQ6533601e-178DQ653360.1 Arabidopsis thaliana clone 0000017130_0000012002 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442692.11e-121PREDICTED: MADS-box protein AGL72-like
RefseqXP_010442693.11e-121PREDICTED: MADS-box protein AGL72-like
SwissprotQ9FLH51e-101AGL72_ARATH; MADS-box protein AGL72
TrEMBLR0GNE91e-106R0GNE9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010442692.11e-121(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.22e-87MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]