PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g083340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 181aa    MW: 20779.8 Da    PI: 9.668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g083340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.5e-142677255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +++h e Er+RR+++ + ++ Lr+llP  +   ++K s ++ + +A +YIk+Lq
  Csa11g083340.1 26 KMMHRETERQRRQEMATLYASLRSLLPLHF--IKGKRSTSDQVNEAANYIKYLQ 77
                    789*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-142291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.912476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.92E-102681No hitNo description
PfamPF000106.3E-112677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-102690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-63082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MDDCRDNRRR RGTKLTCSKN NNDMEKMMHR ETERQRRQEM ATLYASLRSL LPLHFIKGKR  60
STSDQVNEAA NYIKYLQRKT KELSLRRDEL MLLSRGSFLG SSNYDSKEEM EMMSRKNHVV  120
VRQCLVGVEI VFSSGCRSGQ PRFSSVLQVL SENGLYLLNS ISSIVDDGLI YTIQAEVNLS  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g083340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174301e-167AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24.
GenBankBT0109521e-167BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442684.11e-129PREDICTED: transcription factor bHLH36-like
RefseqXP_010442685.11e-129PREDICTED: transcription factor bHLH36-like
SwissprotQ9FLI19e-91BH036_ARATH; Transcription factor bHLH36
TrEMBLR0GSA51e-104R0GSA5_9BRAS; Uncharacterized protein
STRINGXP_010442684.11e-128(Camelina sativa)
STRINGXP_010442685.11e-128(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.14e-93bHLH family protein