PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g081960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YC | ||||||||
Protein Properties | Length: 178aa MW: 19366.9 Da PI: 4.5964 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 138 | 2.5e-43 | 15 | 113 | 2 | 100 |
NF-YC 2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 lk +w +++e + dfknhe+Pla+ik+i+k+d+dv+m++ae+ v++ska e+fi++lt+r+w+ha+enk +t++ diaaav rt++ dfl+d+v Csa11g081960.1 15 LKRYWLNKMEGDLDFKNHEFPLAKIKRIVKFDPDVSMLAAEVAVVFSKASEMFIMDLTMRAWNHAQENKHTTIRGPDIAAAVGRTFKMDFLLDVV 109 89********************************************************************************************* PP NF-YC 97 prde 100 ++e Csa11g081960.1 110 HEEE 113 9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.37E-23 | 18 | 110 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 9.4E-27 | 27 | 96 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-14 | 33 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MENKSNQPPQ DNPKLKRYWL NKMEGDLDFK NHEFPLAKIK RIVKFDPDVS MLAAEVAVVF 60 SKASEMFIMD LTMRAWNHAQ ENKHTTIRGP DIAAAVGRTF KMDFLLDVVH EEEEPKAKPD 120 HEDGELPPGM VIGTPVVDGS GIFGDVLESW PGTWTVAPGE GPVGEDVPGG SGGNGGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-31 | 20 | 109 | 4 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g081960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010442539.1 | 1e-127 | PREDICTED: nuclear transcription factor Y subunit C-8-like | ||||
Swissprot | Q4PSE2 | 2e-55 | NFYC8_ARATH; Nuclear transcription factor Y subunit C-8 | ||||
TrEMBL | R0HYD5 | 3e-75 | R0HYD5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010442539.1 | 1e-127 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17675 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27910.1 | 1e-54 | nuclear factor Y, subunit C8 |
Publications ? help Back to Top | |||
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