PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g081490.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 209aa    MW: 22747.4 Da    PI: 10.2207
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g081490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17e-2165114255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Csa11g081490.1  65 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 114
                     7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1465114IPR001471AP2/ERF domain
SMARTSM003805.9E-3865128IPR001471AP2/ERF domain
PROSITE profilePS5103225.73965122IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2365123IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-3365123IPR001471AP2/ERF domain
PRINTSPR003673.7E-126677IPR001471AP2/ERF domain
CDDcd000184.01E-1673124No hitNo description
PRINTSPR003673.7E-1288104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSAMVSALTQ VVSGRSQTEA ERAHSSSSSA GHKRGWLGIG SSSLGPIEEF TSKALPDEIG  60
GKRRRYRGVR QRPWGKWAAE IRDPHKAARV WLGTFDTAEA AARAYDEAAL RFRGSKAKLN  120
FPEDVRLLLP PPPPPLPLPT DTVVNKAEED LMNYRSYSKL LQSSGQRSFY GHGQEESSNI  180
LEHSPMKQPL PPSSSGQRSS DFSGPSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2462125266ATERF1
3gcc_A7e-2462125266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g081490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8192051e-147JN819205.1 Arabidopsis thaliana ethylene response factor 110 (ERF110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442488.11e-150PREDICTED: ethylene-responsive transcription factor ERF110 isoform X1
SwissprotQ70II35e-81EF110_ARATH; Ethylene-responsive transcription factor ERF110
TrEMBLA0A178U7F56e-77A0A178U7F5_ARATH; Uncharacterized protein
TrEMBLG8IQH22e-78G8IQH2_ARATH; Ethylene response factor 110
STRINGXP_010442488.11e-150(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-60ethylene response factor 110