PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g078930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 285aa    MW: 33207 Da    PI: 6.3998
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g078930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.4e-192875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   Csa11g078930.1 28 RGPWTVEEDLELINYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75
                     89********************************************97 PP
2Myb_DNA-binding50.74e-1681124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   Csa11g078930.1  81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.3782379IPR017930Myb domain
SuperFamilySSF466893.59E-3125122IPR009057Homeodomain-like
SMARTSM007178.4E-162777IPR001005SANT/Myb domain
PfamPF002497.1E-172875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-232982IPR009057Homeodomain-like
CDDcd001674.24E-113075No hitNo description
SMARTSM007172.9E-1480128IPR001005SANT/Myb domain
PROSITE profilePS5129418.37880130IPR017930Myb domain
PfamPF002496.6E-1581124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2283129IPR009057Homeodomain-like
CDDcd001672.39E-6101124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDDKAKSLKI NKNMEDFANV EEEMDLKRGP WTVEEDLELI NYIANHGEGR WNSLARCAGL  60
KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN  120
YWRTRVQKHA KQLRWDVNSQ QFKDTMKYLW MPRLVERIQA TSTRSVSTSS CVTTSSDQFV  180
INNNTTNMEH LSLTSNPNGH IITSDHSNVA VSPSSDLTEC HPQTSSQNYL DNNNCLFGDF  240
TKVQDQSYLN GMIPNYWDST FWNIEYDEDL WLLQQQQQLD SGSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-262512224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g078930.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196350.0AY519635.1 Arabidopsis thaliana MYB transcription factor (At5g49620) mRNA, complete cds.
GenBankBT0260760.0BT026076.1 Arabidopsis thaliana At5g49620 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442426.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY31e-146MYB78_ARATH; Transcription factor MYB78
TrEMBLD7MPC71e-152D7MPC7_ARALL; AtMYB78
STRINGXP_010442426.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-132myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]