PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g073730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BBR-BPC
Protein Properties Length: 343aa    MW: 38324.5 Da    PI: 9.6391
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g073730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind408.76.9e-12513421301
       GAGA_bind   1 mdddgsre..rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     mdd g+re  r+k+       ++ +s+     +q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+al+++e
  Csa11g073730.1   1 MDDGGHREngRHKAAQGqwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTALQYRE 90 
                     999999887888873331222222344.....5************************************************************** PP

       GAGA_bind  89 nsla.......salpvgvqvlsgtksidslqqlse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170
                     ns++       sa+p+g+q+++g+k++++ +++++      pql+++a+e+re+e ++ lp++  a +a e++k+k+++r k+pk++++++++k+
  Csa11g073730.1  91 NSMVtaaaanmSACPPGCQMSRGVKHMHHPHMHHHhqqhhiPQLTENAYETREMEPNDGLPTSPPAVSALESAKPKRGKRVKDPKATTQTAANKR 185
                     **99999**999******************9976679999******************************************************* PP

       GAGA_bind 171 sekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiS 240
                     ++k+++kvkkes+d+                         sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S
  Csa11g073730.1 186 GPKNQRKVKKESEDDLtkimfvktthdyteedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLS 280
                     ************984358********************************88******************************************* PP

       GAGA_bind 241 vyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                     +yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
  Csa11g073730.1 281 MYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 342
                     ************************************88***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.9E-1821342IPR010409GAGA-binding transcriptional activator
PfamPF062174.1E-1031342IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDDGGHRENG RHKAAQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE KKAAIAERDM  60
AFLQRDTAIA ERNNAIMERD SALTALQYRE NSMVTAAAAN MSACPPGCQM SRGVKHMHHP  120
HMHHHHQQHH IPQLTENAYE TREMEPNDGL PTSPPAVSAL ESAKPKRGKR VKDPKATTQT  180
AANKRGPKNQ RKVKKESEDD LTKIMFVKTT HDYTEEDSSK HILIGSKSDW KSQEMVGLNQ  240
VVYDETTMPP PVCSCTGVLR QCYKWGNGGW QSSCCTTTLS MYPLPALPNK RHARVGGRKM  300
SGSAFNKLLS RLAAEGHHDL SNPVDLKDHW AKHGTNRYIT IK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g073730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2217520.0AK221752.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-54-A10.
GenBankAK2272460.0AK227246.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-01-O04.
GenBankBT0248740.0BT024874.1 Arabidopsis thaliana At5g42520 mRNA, complete cds.
GenBankEF1231080.0EF123108.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442173.10.0PREDICTED: protein BASIC PENTACYSTEINE6
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLR0GAL80.0R0GAL8_9BRAS; Uncharacterized protein
STRINGXP_010442173.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.10.0basic pentacysteine 6