PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g072230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ZF-HD | ||||||||
Protein Properties | Length: 228aa MW: 26330.2 Da PI: 9.5423 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 88.5 | 6.5e-28 | 63 | 117 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k +Y eC+kNhAa++G++a+DGCgEf+++ ee + ++l+CaACgCHRnFHR e Csa11g072230.1 63 KPHYGECRKNHAADIGTTAYDGCGEFVTA-AEEEEDQSLNCAACGCHRNFHREELI 117 679*************************9.555699****************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.2E-24 | 65 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.3E-27 | 65 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-18 | 66 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.095 | 66 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 155 | 226 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.93E-12 | 164 | 226 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.503 | 166 | 227 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 5.1E-31 | 169 | 225 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDEIKPKEAE KLKRRRNVKP ICRETGDHVH YPPPTTRKPK SKPTRTHHAP PPILESIFKV 60 THKPHYGECR KNHAADIGTT AYDGCGEFVT AAEEEEDQSL NCAACGCHRN FHREELITDN 120 GVAETVLEVL KISSLQFRQI FCSPYGGGKS KAKKKKEEKG EDLVEKRVKR LKTKFTAEQT 180 EKMKDYAEKL RWKVRPEMRD EVEEFCVEIG VNRKKFKIWM NNHKDKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-13 | 168 | 225 | 17 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g072230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010442119.1 | 1e-169 | PREDICTED: zinc-finger homeodomain protein 13-like | ||||
Swissprot | Q9FMY7 | 1e-116 | ZHD13_ARATH; Zinc-finger homeodomain protein 13 | ||||
TrEMBL | A0A0G4NSG5 | 1e-113 | A0A0G4NSG5_ARATH; Homeobox protein 27 | ||||
TrEMBL | A0A384L2F9 | 1e-113 | A0A384L2F9_ARATH; ZHD13 | ||||
STRING | XP_010442119.1 | 1e-168 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15888 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42780.1 | 1e-108 | homeobox protein 27 |