PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g071760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 200aa MW: 22483.1 Da PI: 6.0194 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.2e-10 | 148 | 188 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN ++ +L++l+P+ +K++ +++Le Av+Y+k Lq Csa11g071760.1 148 RKRRERINGRLKTLQSLVPNG-----TKVDISTMLEDAVHYVKFLQ 188 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.373 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-11 | 143 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-13 | 143 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.55E-11 | 147 | 192 | No hit | No description |
Pfam | PF00010 | 4.2E-8 | 148 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MENGALVDGE YESLLGIFNF DQCSSDDTSF YNAPSEIDAF SSDEFFPFGT SLKRNYPAVL 60 DGSNYQMNLY VDSRQEQMKP MKKQKLSSEN NLVTEPNTAW RDGQSLSRFN SSDDEKALGL 120 TANTSKSLTR KAKPNKRIAS DPQSLYARKR RERINGRLKT LQSLVPNGTK VDISTMLEDA 180 VHYVKFLQLQ IKLLSSDDL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g071760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023030 | 3e-48 | AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5. | |||
GenBank | CP002688 | 3e-48 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019088044.1 | 1e-146 | PREDICTED: transcription factor bHLH139-like isoform X2 | ||||
Swissprot | Q3E7L7 | 1e-115 | BH139_ARATH; Transcription factor bHLH139 | ||||
TrEMBL | A0A178UKI5 | 1e-113 | A0A178UKI5_ARATH; Uncharacterized protein | ||||
STRING | XP_010494289.1 | 1e-128 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4132 | 22 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43175.1 | 1e-118 | bHLH family protein |
Publications ? help Back to Top | |||
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