PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g071690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YC | ||||||||
Protein Properties | Length: 134aa MW: 14907.3 Da PI: 10.486 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 50.6 | 4.1e-16 | 11 | 90 | 19 | 97 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 e+P+ r+kki+k d+d+++i +ea l++ + elf+ l+ +s + a e+kr+t+ + +av+r + + dfl+d p Csa11g071690.1 11 PEFPIGRVKKIMKLDKDINKINSEALHLITYSTELFLHFLAEKSAVVAVEKKRKTVSLDHLRTAVKRHQpTSDFLLDSLP 90 589**************************************************************9976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.19E-19 | 6 | 99 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-20 | 12 | 75 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.0E-21 | 13 | 90 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MAEDQESPIR PEFPIGRVKK IMKLDKDINK INSEALHLIT YSTELFLHFL AEKSAVVAVE 60 KKRKTVSLDH LRTAVKRHQP TSDFLLDSLP LPSQPVRHTK TASDKKAPPP PPVGTRRIDD 120 FFSKGKAKVA DSA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g071690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010442051.1 | 1e-91 | PREDICTED: nuclear transcription factor Y subunit gamma-like | ||||
TrEMBL | R0EZ14 | 5e-78 | R0EZ14_9BRAS; Uncharacterized protein | ||||
STRING | XP_010442051.1 | 4e-91 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12860 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 5e-62 | nuclear factor Y, subunit C13 |