PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g070630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 330aa MW: 35802.9 Da PI: 5.0649 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 50.8 | 3.8e-16 | 244 | 301 | 4 | 61 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +r+rr++kNRe+A rsR+RK+a++ eLe+ +++Le+eN+ L ke+e +ke ++ + Csa11g070630.1 244 AQRQRRMIKNRESAARSRERKQAYQVELETLAAKLEEENELLSKEIEDKRKERYQKLM 301 79*********************************************99999887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.6E-14 | 240 | 296 | No hit | No description |
SMART | SM00338 | 3.6E-12 | 241 | 305 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.2E-15 | 243 | 302 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.197 | 243 | 295 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.75E-10 | 245 | 297 | No hit | No description |
CDD | cd14707 | 9.18E-19 | 245 | 290 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 248 | 263 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MASFQVMRSS NSRNSDLSHR IPSSSSSSSI RPPQQQFMRD LTIGGYCGRN DGGLLYSSTS 60 MTVEGILHDA FASDPPAPTE SSLLDASITL MDASPAPTTV VSDAVDHGGG GGTETTREGR 120 SVDEVWRDMV SGEGKGMKEE TQEEIMTLED FLAKAAGEDE GGAAVTTDDL DVKIPPPTNY 180 GFDHSAPPHN PFQMIDKVEG SIVAFGNGFD VYGGGGGVGA GGGGGGARGK RARVMVEPLD 240 KVAAQRQRRM IKNRESAARS RERKQAYQVE LETLAAKLEE ENELLSKEIE DKRKERYQKL 300 MECVVPVVEK QHQQQQPPRF LRRIRSLEW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g070630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086457 | 1e-127 | AY086457.1 Arabidopsis thaliana clone 25211 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010441945.1 | 0.0 | PREDICTED: G-box-binding factor 4-like | ||||
Refseq | XP_019087736.1 | 0.0 | PREDICTED: G-box-binding factor 4-like | ||||
Swissprot | P42777 | 2e-63 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A178UQ19 | 1e-170 | A0A178UQ19_ARATH; Uncharacterized protein | ||||
TrEMBL | Q8LCQ7 | 1e-170 | Q8LCQ7_ARATH; Uncharacterized protein | ||||
STRING | XP_010441945.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3852 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 1e-133 | bZIP family protein |