PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g070510.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 1705aa MW: 191472 Da PI: 5.0935

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g070510.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5e-18	24	80	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle+Le+ ++ ++yps++ r++L+ kl+L++rq ++WF+ rR k++k Csa11g070510.1 24 KSKRKMKTAAQLEVLETTYAAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKDRK 80 679****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-16	11	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.13E-15	18	80	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.244	21	81	IPR001356	Homeobox domain
SMART	SM00389	9.7E-16	23	85	IPR001356	Homeobox domain
CDD	cd00086	6.56E-13	24	81	No hit	No description
Pfam	PF00046	1.2E-15	24	80	IPR001356	Homeobox domain
SMART	SM00571	2.0E-22	535	594	IPR018501	DDT domain
PROSITE profile	PS50827	15.784	535	594	IPR018501	DDT domain
Pfam	PF02791	1.7E-16	536	591	IPR018501	DDT domain
Pfam	PF05066	1.2E-15	717	785	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.6E-6	920	961	IPR028942	WHIM1 domain
Pfam	PF15613	3.9E-13	1093	1165	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1705 aa Download sequence Send to blast
MEGGSDEATV KNTKTTPEEG GESKSKRKMK TAAQLEVLET TYAAEPYPSE AIRADLSVKL 60 NLSDRQLQMW FCHRRLKDRK STTTTTTPSS KRQRKELITP PMAVESPKPA VNAADLVAGN 120 DFDSRRAVRV SGGSGSGGVT VVKRFNEPSS AEVRAVGYME AQLGERLRDN GPILGMEFDP 180 LPPGAFGMPI EMPSHRKATR QAFETSLYVR SDVKPNKDVR PIREYQFLPD LPSSRTDHSE 240 RVSPSHHYGV PLDASVMRAS AVSAGHRGDY KISPQIPNLN LATHQGKPGH VYSPNLPEYD 300 SPYQKSYMDT PAQRNLNDHP IHEEPFVKSE REVGNEDEDD DALQLERKRK NEEARISREL 360 EAHEKRIRRE LEKQDMLRRK REEQLRKEME RQDRERRKEE ERLLRERQRE EERFMKEQMR 420 ELQRREKFLK KETMRAEKMR QKEEMRREKE VARLKAANER AIARKIAKES MELIEDERLE 480 LMEVAALTKG LPSMLALDFE TLQNLDEYRD KQVLFPPSSV KLKKPFTVKP WNGSDENVAN 540 LLMVWRFLIT FADVFGLWPF TLDEFAQAFH DYDPRLMGEI HIVLLKTIIK DIEGVTRTLL 600 TGVGANQNAA SNPGGGHPHV VEGAYAWGFD IRSWRRNLNV FTWPEILRQL ALSAGLGPQL 660 KKRNIKTVSV HDENEANDSE NVIFNLRKGV AAENAFAKMQ ERGLSNPKRS RHRLTPGTVK 720 FAAFHVLSLE GEKGLTILDV AEKIQRSGLR DLTTSRTPEA SVAAALSRDT KLFERVAPST 780 YCVRASYRKE AGGAETILAE AREKIRAFKS GITDLEDVDD AERDEDSESD VGDDPEVDLH 840 LKKEDPDALE IENSIKVEPV LENGKLDTVT MKTKAGLPIT PSLPEDIKDE KRDDILVDQS 900 LEDAVANDAD SACFDESKLG EQWVQGLVEG DYSNLSSEER LNALVALIGI AIEGNTIRVA 960 LEERLEVAST LKKQMWGEVQ LDKRWKEESL LRANYLSYPT AKPGVNIATP ASGNQESSSA 1020 DVTPISSQDP LSLPQMDVNN VIAGPSLQLQ ENVSGMENLQ YQQQGGYTAD RERLRAQLKA 1080 YVGYKAEELY VYRSLPLGQD RRRNRYWRFS ASASRNDPGC GRIFVELQDG RWRLIDSEED 1140 FDYLVKSLDV RGVRESHLHF MLLKIEASFK EAVRKNVEAN PGLCSVSSSL DSDTAEISTT 1200 FKIELGDSNA IERCSVLQRF QSFEKWMWDN MLHPGALSAF KYGAKQSSPL FRICRTCAGL 1260 HLLEDICCPS CGQKSDVGEL CFADQVAQLG DYSRGGDTGF ILRSSISSPL RIRLLKIQLA 1320 LVEASLPPEG LEAFWTENHR KSWGVKLLSS SSVEELNQVL TTLEVALKRD FLSSNFETTS 1380 ELLGLPEEAL ASDLTCVVNV LPWIPKTTGG VALRLFEFDS AIVYTPDQNN DPLKDKESED 1440 LVGLETNLLR NVPEKDVMET PVQGGYTQEE NWTDPGLGGV SSSGRGGRPP RGRGRPRSRG 1500 SGGNGKKPAV SSSRPPRGAA NTNGETMLRP RAQPRGKKNG RRSSIKGRKR PTKGTLRISN 1560 EVVGGRLAKE VAVTAKTTLP DNEDDWIETP ELQDDDGEAS SSGRSFQYKD YDDDEVMAPM 1620 DDFDDGGESS KLVGRGEFSL HSDDEYEEED EEEEEEEDMN TKMDVDYIND DSFGRREQPE 1680 ISNDAARKRF MFDDPDLTSS SSSY*

Sequence ? help Back to Top

Protein Sequence Length: 1705 aa Download sequence Send to blast

MEGGSDEATV KNTKTTPEEG GESKSKRKMK TAAQLEVLET TYAAEPYPSE AIRADLSVKL  60
NLSDRQLQMW FCHRRLKDRK STTTTTTPSS KRQRKELITP PMAVESPKPA VNAADLVAGN  120
DFDSRRAVRV SGGSGSGGVT VVKRFNEPSS AEVRAVGYME AQLGERLRDN GPILGMEFDP  180
LPPGAFGMPI EMPSHRKATR QAFETSLYVR SDVKPNKDVR PIREYQFLPD LPSSRTDHSE  240
RVSPSHHYGV PLDASVMRAS AVSAGHRGDY KISPQIPNLN LATHQGKPGH VYSPNLPEYD  300
SPYQKSYMDT PAQRNLNDHP IHEEPFVKSE REVGNEDEDD DALQLERKRK NEEARISREL  360
EAHEKRIRRE LEKQDMLRRK REEQLRKEME RQDRERRKEE ERLLRERQRE EERFMKEQMR  420
ELQRREKFLK KETMRAEKMR QKEEMRREKE VARLKAANER AIARKIAKES MELIEDERLE  480
LMEVAALTKG LPSMLALDFE TLQNLDEYRD KQVLFPPSSV KLKKPFTVKP WNGSDENVAN  540
LLMVWRFLIT FADVFGLWPF TLDEFAQAFH DYDPRLMGEI HIVLLKTIIK DIEGVTRTLL  600
TGVGANQNAA SNPGGGHPHV VEGAYAWGFD IRSWRRNLNV FTWPEILRQL ALSAGLGPQL  660
KKRNIKTVSV HDENEANDSE NVIFNLRKGV AAENAFAKMQ ERGLSNPKRS RHRLTPGTVK  720
FAAFHVLSLE GEKGLTILDV AEKIQRSGLR DLTTSRTPEA SVAAALSRDT KLFERVAPST  780
YCVRASYRKE AGGAETILAE AREKIRAFKS GITDLEDVDD AERDEDSESD VGDDPEVDLH  840
LKKEDPDALE IENSIKVEPV LENGKLDTVT MKTKAGLPIT PSLPEDIKDE KRDDILVDQS  900
LEDAVANDAD SACFDESKLG EQWVQGLVEG DYSNLSSEER LNALVALIGI AIEGNTIRVA  960
LEERLEVAST LKKQMWGEVQ LDKRWKEESL LRANYLSYPT AKPGVNIATP ASGNQESSSA  1020
DVTPISSQDP LSLPQMDVNN VIAGPSLQLQ ENVSGMENLQ YQQQGGYTAD RERLRAQLKA  1080
YVGYKAEELY VYRSLPLGQD RRRNRYWRFS ASASRNDPGC GRIFVELQDG RWRLIDSEED  1140
FDYLVKSLDV RGVRESHLHF MLLKIEASFK EAVRKNVEAN PGLCSVSSSL DSDTAEISTT  1200
FKIELGDSNA IERCSVLQRF QSFEKWMWDN MLHPGALSAF KYGAKQSSPL FRICRTCAGL  1260
HLLEDICCPS CGQKSDVGEL CFADQVAQLG DYSRGGDTGF ILRSSISSPL RIRLLKIQLA  1320
LVEASLPPEG LEAFWTENHR KSWGVKLLSS SSVEELNQVL TTLEVALKRD FLSSNFETTS  1380
ELLGLPEEAL ASDLTCVVNV LPWIPKTTGG VALRLFEFDS AIVYTPDQNN DPLKDKESED  1440
LVGLETNLLR NVPEKDVMET PVQGGYTQEE NWTDPGLGGV SSSGRGGRPP RGRGRPRSRG  1500
SGGNGKKPAV SSSRPPRGAA NTNGETMLRP RAQPRGKKNG RRSSIKGRKR PTKGTLRISN  1560
EVVGGRLAKE VAVTAKTTLP DNEDDWIETP ELQDDDGEAS SSGRSFQYKD YDDDEVMAPM  1620
DDFDDGGESS KLVGRGEFSL HSDDEYEEED EEEEEEEDMN TKMDVDYIND DSFGRREQPE  1680
ISNDAARKRF MFDDPDLTSS SSSY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1536	1550	KKNGRRSSIKGRKRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g070510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005239	0.0	AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441920.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	R0EUK2	0.0	R0EUK2_9BRAS; Uncharacterized protein
STRING	XP_010441920.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator