PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g068070.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BES1

Protein Properties

Length: 682aa MW: 76668.9 Da PI: 6.0273

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g068070.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	161.9	4.2e-50	78	226	2	145
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq. 95 g+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+ ++++ ++s+es+l+ Csa11g068070.1 78 GKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN----HVVQYPTRSIESPLSs 168 789**********************************************************************....8999999999999998 PP DUF822 96 sslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlsl 145 s+lk++a+a+ +++++++ ++ +sp+slds+ +a++ + +p++sv +l Csa11g068070.1 169 STLKNCAKAALECQQHSVLRIDENLSPVSLDSVVIAENdhpgngrySGASPITSVGCL 226 99*******************************99988888877677777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.8E-48	78	223	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.82E-161	245	679	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	3.2E-169	248	678	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	3.5E-82	254	641	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-55	284	298	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-55	305	323	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-55	327	348	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-55	420	442	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-55	493	512	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-55	527	543	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-55	544	555	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-55	562	585	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.3E-55	600	622	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MHTLNNTTGS QDPNLDPIPS NPDQFPNRNL NHPQTRRPRG FAATAAAASI VPTESDVHNG 60 NIGGIGGGEG SSGGGERGKG KREREKEKER TKLRERHRRA ITSRMLAGLR QYGNFPLPAR 120 ADMNDVIAAL AREAGWSVDA DGTTYRQSHQ PNHVVQYPTR SIESPLSSST LKNCAKAALE 180 CQQHSVLRID ENLSPVSLDS VVIAENDHPG NGRYSGASPI TSVGCLEANQ LIQDVHSTEP 240 RNDFTESFYV PVYAMLPVGI IDNFGQLVDP DGVRQELSYM KSLNVDGVVI DCWWGIVEGW 300 NPQKYVWSGY RELFNLIRDF KLKLQVVMAF HEYGGNVSGN VIISLPQWVL EIGKDNPDIF 360 FTDREGRRSF ECLNWSIDKE RVLHGRTGIE VYFDFMRSFR SEFDDLFVEG LIASVEIGLG 420 ASGELKYPSF PERMGWIYPG IGEFQCYDKY SQLNLQKEAK SRGFAFWGKG PENAGQYNSQ 480 PHETGFFQER GEYDSYYGRF FLNWYSQLLI GHAENVLSLA NLAFEETKII VKIPAIYWSY 540 KTASHAAELT AGYYNPSNRD GYSPLFETLK KYSVTLKFVC PGPQMSPNEH EEALADPEGL 600 SWQVINAAWD KQLLIGGENA ITCFDREGCV RLIDIAKPRN HPDSYHFSFF TYRQPSPLVQ 660 GSTCFPDLDY FIKRMHGDVH R*

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MHTLNNTTGS QDPNLDPIPS NPDQFPNRNL NHPQTRRPRG FAATAAAASI VPTESDVHNG  60
NIGGIGGGEG SSGGGERGKG KREREKEKER TKLRERHRRA ITSRMLAGLR QYGNFPLPAR  120
ADMNDVIAAL AREAGWSVDA DGTTYRQSHQ PNHVVQYPTR SIESPLSSST LKNCAKAALE  180
CQQHSVLRID ENLSPVSLDS VVIAENDHPG NGRYSGASPI TSVGCLEANQ LIQDVHSTEP  240
RNDFTESFYV PVYAMLPVGI IDNFGQLVDP DGVRQELSYM KSLNVDGVVI DCWWGIVEGW  300
NPQKYVWSGY RELFNLIRDF KLKLQVVMAF HEYGGNVSGN VIISLPQWVL EIGKDNPDIF  360
FTDREGRRSF ECLNWSIDKE RVLHGRTGIE VYFDFMRSFR SEFDDLFVEG LIASVEIGLG  420
ASGELKYPSF PERMGWIYPG IGEFQCYDKY SQLNLQKEAK SRGFAFWGKG PENAGQYNSQ  480
PHETGFFQER GEYDSYYGRF FLNWYSQLLI GHAENVLSLA NLAFEETKII VKIPAIYWSY  540
KTASHAAELT AGYYNPSNRD GYSPLFETLK KYSVTLKFVC PGPQMSPNEH EEALADPEGL  600
SWQVINAAWD KQLLIGGENA ITCFDREGCV RLIDIAKPRN HPDSYHFSFF TYRQPSPLVQ  660
GSTCFPDLDY FIKRMHGDVH R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-121	249	678	11	444	Beta-amylase
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g068070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117140	0.0	AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBank	BT006482	0.0	BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441757.1	0.0	PREDICTED: beta-amylase 8-like
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	R0EUN6	0.0	R0EUN6_9BRAS; Beta-amylase (Fragment)
STRING	XP_010441757.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10888	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]