PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa11g064550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25426.7 Da PI: 5.2668 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.3e-20 | 113 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f tae+Aa a+++a+ +++g Csa11g064550.1 113 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 163 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.99E-33 | 112 | 171 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 112 | 171 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.276 | 113 | 171 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.8E-41 | 113 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-23 | 113 | 173 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.8E-14 | 113 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MYGQCDIESD YDLLEMVRCH LLGGENELRL NESMPSSCLT ERWGDLPLKE NDSEDMLVYG 60 LLKDAFHFDT SSSDLSCLYD FPAVKIEPTE VLAAEKPKKA VTVAAEEAPK GKHYRGVRQR 120 PWGKFAAEIR DPAKNGARVW LGTFETAEDA ALAYDRAAFR MRGSRALLNF PLRVNSGEPE 180 PVRITSKRSS SSSENGKLKR RKKTEYLTSE VKCEVGDETR VDELLV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-44 | 110 | 178 | 2 | 70 | ATERF1 |
3gcc_A | 1e-44 | 110 | 178 | 2 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00548 | DAP | Transfer from AT5G47220 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa11g064550.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB008104 | 1e-146 | AB008104.1 Arabidopsis thaliana AtERF-2 mRNA for ethylene responsive element binding factor 2, complete cds. | |||
GenBank | AB018117 | 1e-146 | AB018117.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5. | |||
GenBank | AK175151 | 1e-146 | AK175151.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL21-57-E18. | |||
GenBank | AK175229 | 1e-146 | AK175229.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2, complete cds, clone: RAFL21-65-J18. | |||
GenBank | AK176532 | 1e-146 | AK176532.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL25-05-B19. | |||
GenBank | AK176606 | 1e-146 | AK176606.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL25-13-E16. | |||
GenBank | AK176825 | 1e-146 | AK176825.1 Arabidopsis thaliana mRNA for ethylene responsive element binding factor 2 (ATERF2), complete cds, clone: RAFL25-38-F08. | |||
GenBank | BT024470 | 1e-146 | BT024470.1 Arabidopsis thaliana At5g47220 mRNA, complete cds. | |||
GenBank | CP002688 | 1e-146 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010441485.1 | 1e-167 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | O80338 | 1e-131 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A178UCP3 | 1e-129 | A0A178UCP3_ARATH; ERF2 | ||||
STRING | XP_010441485.1 | 1e-167 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47220.1 | 1e-112 | ethylene responsive element binding factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|