PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g057180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25764.2 Da PI: 10.2119 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.9 | 3.5e-20 | 7 | 56 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s v +s+R+++++ KAe LSvLC+++v+vi+++++g l+++++ Csa11g057180.1 7 SSSSSSYPLVALSNRLETVFRKAEQLSVLCQIDVCVIYYGPKGDLKTFPN 56 688899999***************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.49E-12 | 16 | 89 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-11 | 16 | 54 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.61 | 16 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MRSLPSSSSS SSYPLVALSN RLETVFRKAE QLSVLCQIDV CVIYYGPKGD LKTFPNEKEK 60 VRNMAMRYSR LNDSLRSKKR VSLSEFLKDK GLENPNKRRK TTTSPKKNYV DVLKYPISDH 120 YSPDQIPQLI QSLQLNLSTF QQRLRFLVSQ EKHKQLLDHH HQSFVPSTSS SSLTTPSLNP 180 SQQFSLFVYN HGDNTLSQIP VSASNLNQDF SALLQESQLK NGHNMS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 99 | KKRVSLSEFLKDKGLENPNKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g057180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445670.1 | 1e-164 | PREDICTED: agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FLL0 | 4e-73 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | R0F283 | 6e-82 | R0F283_9BRAS; Uncharacterized protein | ||||
STRING | XP_010445670.1 | 1e-163 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41200.1 | 3e-69 | AGAMOUS-like 75 |
Publications ? help Back to Top | |||
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