PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g055680.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 461aa MW: 50033.3 Da PI: 5.0076

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g055680.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.2e-39	140	199	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ Csa11g055680.1 140 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSP 199 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-32	136	197	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-32	142	198	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.612	144	198	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	146	182	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MADPAIKLFG KTIPLPELGI VVVDSSCSSF TENHDQNPLV RLSDSCTGDD DDEDEMGDSG 60 SGEGGGGESE SDKKEIQEGK DNECQEESLK HESNEVTATS GVNDKTETTK AAKTNEESSP 120 NETGGGTTTA CSQEAKLKKP DKILPCPRCN SMETKFCYYN NYNVNQPRHF CKKCQRYWTA 180 GGTMRNVPVG AGRRKNKSPA SHYNRHVSIT SAEALQKVAR TDLQHPNGAN LLTFGSDSVL 240 CESMASGLNL AEKSMLKTQT TLQEPNEGLK ITVPLNPPNE EAGTISPLPK VPCFPGPPPA 300 WPYAWNGVSW TVLPFYPPPA YWSCPGVSPG AWNSFTWMPQ PNSPSGSSPN SPTLGKHSRD 360 ENADEACEET ESLGRERSKP ERCLWVPKTL RVDDPEEAAK SSIWETLGIK KDENADTFGA 420 FRSSTKEKSS LSEGKLPGRR LELQANPAAL SRSTNFHETS *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MADPAIKLFG KTIPLPELGI VVVDSSCSSF TENHDQNPLV RLSDSCTGDD DDEDEMGDSG  60
SGEGGGGESE SDKKEIQEGK DNECQEESLK HESNEVTATS GVNDKTETTK AAKTNEESSP  120
NETGGGTTTA CSQEAKLKKP DKILPCPRCN SMETKFCYYN NYNVNQPRHF CKKCQRYWTA  180
GGTMRNVPVG AGRRKNKSPA SHYNRHVSIT SAEALQKVAR TDLQHPNGAN LLTFGSDSVL  240
CESMASGLNL AEKSMLKTQT TLQEPNEGLK ITVPLNPPNE EAGTISPLPK VPCFPGPPPA  300
WPYAWNGVSW TVLPFYPPPA YWSCPGVSPG AWNSFTWMPQ PNSPSGSSPN SPTLGKHSRD  360
ENADEACEET ESLGRERSKP ERCLWVPKTL RVDDPEEAAK SSIWETLGIK KDENADTFGA  420
FRSSTKEKSS LSEGKLPGRR LELQANPAAL SRSTNFHETS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g055680.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB012243	0.0	AB012243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIJ24.
GenBank	BT015791	0.0	BT015791.1 Arabidopsis thaliana At5g39660 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010441080.1	0.0	PREDICTED: cyclic dof factor 2-like
Swissprot	Q93ZL5	0.0	CDF2_ARATH; Cyclic dof factor 2
TrEMBL	A0A178UGH8	0.0	A0A178UGH8_ARATH; CDF2
STRING	XP_010441080.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13795	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	0.0	cycling DOF factor 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]