PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g046590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | BES1 | ||||||||
Protein Properties | Length: 211aa MW: 24219.6 Da PI: 8.7528 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 145 | 6.5e-45 | 2 | 76 | 1 | 75 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskp 75 ++++r+ptw+ErEnnkrRERrRRa+a ki++GLR++Gny+lpk++DnneVlkAL +eAGw+ve+D ttyrk + Csa11g046590.1 2 TSGTRMPTWRERENNKRRERRRRAMADKIFTGLRMYGNYELPKHCDNNEVLKALYNEAGWIVEPDSTTYRKKFAG 76 5899******************************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 7.9E-42 | 3 | 76 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MTSGTRMPTW RERENNKRRE RRRRAMADKI FTGLRMYGNY ELPKHCDNNE VLKALYNEAG 60 WIVEPDSTTY RKKFAGEEGE GVDVQKLFAY IGLFTLVALW WLVWPLTALG MNPSLPYHTL 120 KVDEVVLANG FVGRVLSDYF WYVTMILCCQ LDDSKSQAFS DNFSKNSSST ETLSLEIYHS 180 NNIKRNTNLS QTQKLENLLA LRVNGIDTAK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 7e-18 | 6 | 80 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 7e-18 | 6 | 80 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 7e-18 | 6 | 80 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 7e-18 | 6 | 80 | 372 | 446 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g046590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY057538 | 2e-68 | AY057538.1 Arabidopsis thaliana AT4g32140/F10N7_50 mRNA, complete cds. | |||
GenBank | AY113057 | 2e-68 | AY113057.1 Arabidopsis thaliana AT4g32140/F10N7_50 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15511 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 5e-29 | BES1/BZR1 homolog 4 |