PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g043270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 397aa    MW: 43935.7 Da    PI: 8.476
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g043270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.78e-1024522250
                    HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50
                    KKA ELSvLC+  v  i +++++ l+ ++
  Csa11g043270.1 24 KKATELSVLCGNSVGFICYGPDNDLHVWP 52
                    9**************************98 PP

2SRF-TF29.78e-102442722250
                     HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  22 KKAeELSvLCdaevaviifsstgklyeys 50 
                     KKA ELSvLC+  v  i +++++ l+ ++
  Csa11g043270.1 244 KKATELSVLCGNSVGFICYGPDNDLHVWP 272
                     9**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-91982IPR002100Transcription factor, MADS-box
PfamPF003196.4E-72251IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-11235306IPR002100Transcription factor, MADS-box
PfamPF003195.3E-7242271IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAPRLNKVGG DKNYFKQIFP TFKKKATELS VLCGNSVGFI CYGPDNDLHV WPEPQDNPQA  60
LPEIVGKFNA LSDHMRMSHA SDLFDLPYLK GLSIEELLRH LAKLNSHLVG IKQKKMTVLK  120
RRGNSKKPND HLRVSDNAAT IISNRKVAAS SDDRLGFGES GYVLRGSHET VSSLGSSVFS  180
VSDSSPATDN SRVIPSDLQN QSELRSSSLS FNIAPRDKSS GGDDDDVKRV KKNFFKHIFP  240
TFKKKATELS VLCGNSVGFI CYGPDNDLHV WPEPQDNPRA IPEIIEKFNG LSDHKRKNHA  300
SDLYNFPNLK GLSGDELRNH LINLESHLLG IKQKKLCLST RENSKPRDIR VSDSSVLHPS  360
SGDYLPVDPM EVCTNNEGAW DLCRIELGFA SSLLPS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g043270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083117.11e-169PREDICTED: uncharacterized protein LOC104700767 isoform X1
RefseqXP_019083118.11e-169PREDICTED: uncharacterized protein LOC104700767 isoform X1
SwissprotQ9ZUI92e-50AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLR0I9883e-69R0I988_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010424594.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.18e-53AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]