PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g042890.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 1050aa MW: 118253 Da PI: 7.9386

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g042890.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.2	8.8e-11	5	48	8	51
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNr 51 ++ q+++Le+++ +++yp+ +e+e++ k+lgLt +qV+ WF+ r Csa11g042890.2 5 SPVQVQALEAFYFEQMYPTPKEMEDMGKSLGLTVKQVSGWFKRR 48 788**************************************844 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.592	1	48	IPR001356	Homeobox domain
SMART	SM00389	1.2E-5	1	59	IPR001356	Homeobox domain
CDD	cd00086	4.28E-10	3	50	No hit	No description
SuperFamily	SSF46689	7.27E-9	3	48	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-10	4	46	IPR009057	Homeodomain-like
Pfam	PF00046	2.7E-8	5	48	IPR001356	Homeobox domain
PROSITE profile	PS50827	12.501	351	410	IPR018501	DDT domain
SMART	SM00571	1.1E-10	351	410	IPR018501	DDT domain
Pfam	PF02791	2.6E-9	352	405	IPR018501	DDT domain
Pfam	PF15612	9.4E-8	631	671	IPR028942	WHIM1 domain
Pfam	PF15613	3.6E-11	754	827	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1050 aa Download sequence Send to blast
MKRKSPVQVQ ALEAFYFEQM YPTPKEMEDM GKSLGLTVKQ VSGWFKRRSR GKGVISPADD 60 VVGGGNPQSY NTSRIRSSMS SRCDFRAGVK KRCSVETRKA NCQELFTSQH ILAKIFRKDG 120 PPLGSEFDHL SSGARKASWL GTSSVEQQKQ RMTRKRKISE LMDHTSQDCV QENATVMKHG 180 IGKGLMTVWR VMNPNRRDVS PCVGLLDERA TLPQSSARNP PHQKKKQSQL ASILKQKLLQ 240 KRSTEKKRRS INREVELNKD ETQREFKDNC ELAVDREVFK ETCQTTSILV DDEELEMRER 300 QERGNPLTCS CHHSSSGAHG CFLCKDLLPK FPPNSVQMRV PFGLHPWNSF PETVKKLFKV 360 VHFLYTYSVT LDICPFTLDE FTRAFHDKDS LLLGKIHLSL LKLLLLDVET ELQRGYFSNL 420 SISCKFLALL QSVESQILIL DLWKDSLNSL TWTEILRQIL VAAGYGSVKG AVQSEELSKE 480 RRLMKNYGLH LGTLKGELFR MLNKQGNNGL KISELANAPE VAVLNLATAQ EERENSICST 540 LASDITLFEK ISESTYRVRV NCFSEDLDKS QSDSDASGSV DDESDTCSVS SGDDIEHVSE 600 NSALRKVKCR KRRKHKSKMR ELCSEIDESH PGEPWLLGLM EGEYSDLSIE EKLDVFVALI 660 DLLSSGSTIR MEDLPRAMVD CVPSIYSHGS GGKIKRSSSN QYSYPRGSWV HGGELPGIKA 720 LSKSSDSHPV DSSSVVGDFA NLAGDNANNV HPMQSVYLGS DRRFNRYWLF LGTCNANDPG 780 HRCVFFESSE DGHWEVINNK EALRALLSVL DDRGRREARL VESLEKRESF LCQAMLSGQV 840 TQSERSHFTD IVREDSSSPV SDIDNNLCLS EIANDQFSSQ HAAIVFEIGS KREKSLLWSL 900 LQDKKEECDT FPDHKVLSSQ LQSLKAAVYA IESAMPEDAL IGAWRKSAHR LWAKRLRRSS 960 TVSEITQVIG DFVGAINEDW LWHSSDQGHS NALLGETISC YPSMPQTTSA MALWLVKLDT 1020 LIAAYVEKAQ PERNQLLCRT RNTSRRASRR

Sequence ? help Back to Top

Protein Sequence Length: 1050 aa Download sequence Send to blast

MKRKSPVQVQ ALEAFYFEQM YPTPKEMEDM GKSLGLTVKQ VSGWFKRRSR GKGVISPADD  60
VVGGGNPQSY NTSRIRSSMS SRCDFRAGVK KRCSVETRKA NCQELFTSQH ILAKIFRKDG  120
PPLGSEFDHL SSGARKASWL GTSSVEQQKQ RMTRKRKISE LMDHTSQDCV QENATVMKHG  180
IGKGLMTVWR VMNPNRRDVS PCVGLLDERA TLPQSSARNP PHQKKKQSQL ASILKQKLLQ  240
KRSTEKKRRS INREVELNKD ETQREFKDNC ELAVDREVFK ETCQTTSILV DDEELEMRER  300
QERGNPLTCS CHHSSSGAHG CFLCKDLLPK FPPNSVQMRV PFGLHPWNSF PETVKKLFKV  360
VHFLYTYSVT LDICPFTLDE FTRAFHDKDS LLLGKIHLSL LKLLLLDVET ELQRGYFSNL  420
SISCKFLALL QSVESQILIL DLWKDSLNSL TWTEILRQIL VAAGYGSVKG AVQSEELSKE  480
RRLMKNYGLH LGTLKGELFR MLNKQGNNGL KISELANAPE VAVLNLATAQ EERENSICST  540
LASDITLFEK ISESTYRVRV NCFSEDLDKS QSDSDASGSV DDESDTCSVS SGDDIEHVSE  600
NSALRKVKCR KRRKHKSKMR ELCSEIDESH PGEPWLLGLM EGEYSDLSIE EKLDVFVALI  660
DLLSSGSTIR MEDLPRAMVD CVPSIYSHGS GGKIKRSSSN QYSYPRGSWV HGGELPGIKA  720
LSKSSDSHPV DSSSVVGDFA NLAGDNANNV HPMQSVYLGS DRRFNRYWLF LGTCNANDPG  780
HRCVFFESSE DGHWEVINNK EALRALLSVL DDRGRREARL VESLEKRESF LCQAMLSGQV  840
TQSERSHFTD IVREDSSSPV SDIDNNLCLS EIANDQFSSQ HAAIVFEIGS KREKSLLWSL  900
LQDKKEECDT FPDHKVLSSQ LQSLKAAVYA IESAMPEDAL IGAWRKSAHR LWAKRLRRSS  960
TVSEITQVIG DFVGAINEDW LWHSSDQGHS NALLGETISC YPSMPQTTSA MALWLVKLDT  1020
LIAAYVEKAQ PERNQLLCRT RNTSRRASRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g042890.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL049640	0.0	AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBank	AL161534	0.0	AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010445475.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3-like, partial
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	R0GUF4	0.0	R0GUF4_9BRAS; Uncharacterized protein
STRING	XP_010445475.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator